RNA id: TU80489


Basic Information

Item Value
RNA id TU80489
length 577
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G64341
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25463540 ~ 25464116 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCAGCGCCCTCTTCATGGCCTCCTGGCTGTAGGGACACTCCCCGGTGACGACAGCGCTGAAGTAGATCGGCTCCTGCAGGAAGTGGGAGAGCAGCGCCCCCTGGCAGCCCACCACGTTCCAGCGCGCAAGCTTGTCACTGCAGCACAGGGAGAGGGTGCGGTCGCCTCGACCCGGCTTCACCCGCAGCACACCCACGCAGTGGTAGCCCTCCCCCGGCCGAAGGGGGTCCTGCTTGGCTGTTGGGACACACTTGGCTCCGGTTCTGTGTACATCAGGCCCCTTGGAGTCAGGGGCTGTTTCCGAGCTGCCCGGGCCAGATCCTGTGCTGCTGCCATGGGGAGGATCAGAGCCTTCCTCCCCGAGCACAGAGCCCCCTTCCCCCACAACCGCACAATCCAAGGGGCATGTTTTTAAGCGCTTGACTGGCTCCCCGTTCTCCTCTGCTTTCCGTTTTGAGGGCGAGGCCTCAACCCCACTCTTGCCCTTGGTCAGGTGATCAGTGATGTCACTTGGTGCTCTGATTGGCTGGCAGGGTTGATCCTGGCTCGCCACCATAGGGATAATAGAGGCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80488 lncRNA downstream 1898 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 199305 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 246847 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 324155 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 343944 25111110 ~ 25119596 (-) False AMCG00020581
TU80490 lncRNA upstream 761 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 176454 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 227292 25691408 ~ 25779211 (-) True G64418
TU80595 lncRNA upstream 250019 25714135 ~ 25715457 (-) False AMCG00020604
TU80596 lncRNA upstream 250019 25714135 ~ 25714923 (-) False AMCG00020604
AMCG00020591 mRNA downstream 115222 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020592 mRNA downstream 133695 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020590 mRNA downstream 160568 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020589 mRNA downstream 179331 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 351053 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020594 mRNA upstream 9139 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 87474 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 101467 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020601 mRNA upstream 125898 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020602 mRNA upstream 179631 25643747 ~ 25681156 (-) True AMCG00020602
TU80433 other downstream 132970 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 160559 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 187123 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 221029 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 252477 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 434312 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 434312 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1781898 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2762419 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2861191 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile