RNA id: TU80490


Basic Information

Item Value
RNA id TU80490
length 474
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G64342
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25464877 ~ 25465350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGAGGTCGGTCACTCAGGCCGGGGTCACAGGCTGTCAGAGTCAAACGCCTGGCTTAAGGATCTGTCAGGTCATTTGACTGTAATAATCAGACAGGTTTGCACACAGTACTGCAGTGTTGAAGGAGCTTCACACAGAGCCAGCATGGCTGTGAACAAACACCTAGCACGAGACACAACAGCGAACTGGGCTGCCTCTCCTCTACTACACAGCAGTGCCTGTGGAGAGATTTCAATTGCACTGCatcttttattttacattttctgtgaagTGCCATTAAATATTCATTGCAAGCCTTTCCCATTAGATCATGTGAGATTGATTGCATTCCATTAACTCCATTAGCATtcgtttaagaaaaaaaaaaaaaaaaaaaggaattataCTCTACAAAGCTTTTATAATCGGGTGCAGTGATGTATTTAGGGCCCCACAGTGCAGTGAGTGTGTACCGCTGGTTTACCTGGCCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80489 lncRNA downstream 761 25463540 ~ 25464116 (-) True G64341
TU80488 lncRNA downstream 3235 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 200642 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 248184 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 325492 25136432 ~ 25139385 (-) True G64247
TU80578 lncRNA upstream 175220 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 226058 25691408 ~ 25779211 (-) True G64418
TU80595 lncRNA upstream 248785 25714135 ~ 25715457 (-) False AMCG00020604
TU80596 lncRNA upstream 248785 25714135 ~ 25714923 (-) False AMCG00020604
TU80665 lncRNA upstream 429802 25895152 ~ 25895866 (-) False AMCG00020614
AMCG00020591 mRNA downstream 116559 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020592 mRNA downstream 135032 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020590 mRNA downstream 161905 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020589 mRNA downstream 180668 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 352390 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020594 mRNA upstream 7905 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 86240 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 100233 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020601 mRNA upstream 124664 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020602 mRNA upstream 178397 25643747 ~ 25681156 (-) True AMCG00020602
TU80433 other downstream 134307 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 161896 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 188460 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 222366 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 253814 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 433078 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 433078 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1780664 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2761185 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2859957 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile