RNA id: TU80578


Basic Information

Item Value
RNA id TU80578
length 2804
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G64412
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25640570 ~ 25643373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACCTGCACAAAAGCCCACTGCACATGTAATCCAGAGAAGGTAACCAGAGtgaaatttattttcatgttgtgtTCGTATTCATCTCTTACATGATTTCCTCTTGACCACATAGTAGGTGAACTTAGAAACTCTGTAGagcatatattacattttagagATTTCCTTGTgctttgtgattattattgctttatttctgATGTAATATCAGTACattgatgaaaacaaaccatgtaAAATTGTATTACCTCTcagttttccatgtttttttttttttaagcctatCTTTTGAATAGTCTTACAAAACACAGTTAAGCCAGAGCCTCGGGGCTTCACTTCTGCATCCACTTTAACAGAAGGCAATGTACACAGACCAGATCAGAtttgcagtgctgtgctgtgtcatACAATTCCTTGTGATAAACCAGTGTAGGTATTTAGAAAAACTTTCCAATTTGAGCTCTAGCACAAAAGCAAATCAGTAGAGGACatgggatttaaaaacaaacttggaAACTGAGagcctttattttgtttgttttgtgttttggggtTGCCATAGGAGCTTTGAACTCAGCCCCAGTCCCATTATCTTTGTCCAGGTTGCATAGTTGAATATGCCTCAAACTCTTTGCTCAGACGGCTCTTGAGAAACCAGCAGGAAATCTCAAGTGTCATCTCCTGAGAGCCAGTAGCACAAAATTACAACCACGTCGCCACCAACTACAACAACACAGGCCCCCAGCAAAGATGAGCTGCACAGTGCTACAACCGGGTTTCCAATGAGAAGCAGATTAACCTAAAATGCAGGGCTATTATAGATGAACCACTGTTGGTCCCTAGAATACCGATCATTCCTGGCCCATGTGGAAATCCTTCGGTAACAGTGTTCTGCTGTACAGTTGTTCCATAATTGTCAACCCCCCCTCTTAAAAATTCAAAAAGCAACAACCTCAGTCCcacattttacatgaatatgATTTTGACTCATCTGAGGTGATTGATCACAAGCAGGACAATGTTTTGACATCTGCTTTCAGAACGTCCTTCTGAAAAACAAGAATTGTCTAATTTATTATTCTGTAGTCTGTTATAAAAACTGCTGTGGTTTCTCAgggtttgtttttgaaatctgGGAGATGAATGTATTGATGTTACTGTTCAGGATGTTGCTTTAACAATGTGCACTGCTTATTCGTAACACTGCAATCCACAGAGATGTACAATACTCATTctgtttcaattattttcagtgtacttttgatgtttttgttgacaatttgtgtgtgtatgcatagaTATTTAATGCTTCCTCACTTGTTATAGCATGTCAATTCtgaagcatatttaaaaaaaagtccataTATACTGCACATCAGTACCCACCCACATTTGCACACTATCTCACAGAAGACCTTTTCAGGTTCATTGTTcatttatgaaaaatgttgaCTTCTTCAGGTAACATGGCATATTAAAATGACAGACATGTCAAATGTTCTCTCCGTAACTGTCTCAGCATTTGCCCGAGGAATCACTTGGCAAGGAACCCACAAAGATCTGAAATAAGCAAAACCTGGATGGCAATTACCTCATTTATACCAAGATCATTCATCAcagagattattttttgttgtaaatcCATGTAACTTTCCTGGCACAGGGGGTTGTTGGCTGTGGATTTTGTTACGCATTTGTAAATGTAAGCATTACAAACACTGGCATTGATACTTTTCCATGTAGAcaatagtgttgttttttaattatttctattaattccagttcatatttacaaaatgtagacATCTAACTTGATTCaagtatataatttttaaacagTGCTTGCTTCTTCCAAAAATGGTAAGTGCACTACTGAATGTATGTAGTTTAGATCtgcaaattgttatttattttttcaagcaGAATTCTTGACTGAATTGTAGTATCATGTGAAATGACTGCACGCCGGGCGTGAGAGAAGATCTCCGTTGTATATTTGGTTTGGCTCCTCTCTCCTACTGAGGTGAAGTGACATACCTGAACAACCATGGGAAGGATAAATCCACTGGAATCCCTGTGaataccattttatttattttattgaatttcaaTGATGAGCCAATAACGCTCTCTGCCTTGGGGCGATTCAATCTTAAAAGATCGGAGTGCATCAGCAAGCAGTTGTATAATGGAAAGATGTAGAGAACTTGCATAGCAACCTCTTTACTACTCAGATATAATATTAGACTAATTTATATATAAGTGTATTGATGAGGAGATATATtttttggctttttattttttatttggttttgtttgtccaTTTTATGAATTAGAGGGTAAAAAGGGTAGTTTGCATGAAAAACAGGGAGGCGGGGGGTGATGTATATGATTTCCTTCCATAAAAACAAGTTTGCATCATAATTTAATCAGCGTAGAGGAACTTGCAGTTTAATAGAAGTGGAGTGTCACTCAGCAGCTCCATGTATATTTACATCTTTACATCAAGATTCCCTGAGTGTAGAGCGGGAGGGAAGGTTCTTGGTGAAGCCGAATCCTGTGGTCTGAGCTCTTCAATTGCTCAATCTGTATGCAAAGATATGCAACATGTTTTCCTGCTGAAGTGTATTAAACTCATTTGTACTGGAACTAACATTAAGTTAGCCTGAATTTTGAATGTCAAATGTACACTACAAATGCATAGCTGCAagtttctgtaaataaaatgtttatctttTTATGCCAGTGTGCTGCTTTATAGAGTACTGTACGATGTAagcaagatgtttttatttataataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80490 lncRNA downstream 175220 25464877 ~ 25465350 (-) True G64342
TU80489 lncRNA downstream 176454 25463540 ~ 25464116 (-) True G64341
TU80488 lncRNA downstream 178928 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 376335 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 423877 25203124 ~ 25216693 (-) True G64258
TU80594 lncRNA upstream 48035 25691408 ~ 25779211 (-) True G64418
TU80595 lncRNA upstream 70762 25714135 ~ 25715457 (-) False AMCG00020604
TU80596 lncRNA upstream 70762 25714135 ~ 25714923 (-) False AMCG00020604
TU80665 lncRNA upstream 251779 25895152 ~ 25895866 (-) False AMCG00020614
TU80672 lncRNA upstream 288326 25931699 ~ 25932142 (-) True G64477
AMCG00020601 mRNA downstream 45302 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020595 mRNA downstream 65960 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020597 mRNA downstream 87601 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020594 mRNA downstream 160808 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020591 mRNA downstream 292252 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020602 mRNA upstream 374 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020604 mRNA upstream 43902 25687275 ~ 25714902 (-) True AMCG00020604
AMCG00020605 mRNA upstream 85606 25728979 ~ 25737475 (-) True AMCG00020605
AMCG00020612 mRNA upstream 218382 25861755 ~ 25867205 (-) True AMCG00020612
AMCG00020614 mRNA upstream 242677 25886050 ~ 25905598 (-) True AMCG00020614
TU80433 other downstream 310000 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 337589 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 364153 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 398059 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 429507 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 255055 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 255055 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1602641 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2583162 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2681934 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile