RNA id: TU80594


Basic Information

Item Value
RNA id TU80594
length 1417
lncRNA type read_through
GC content 0.39
exon number 2
gene id G64418
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25691408 ~ 25779211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATTTTGTGGTgaacttgaaattaaaaaaagaaacgaagaattatacaaaaatcaaatttatttatttaaaagcatatgCATGTTTATGGGAAGTGTTTTTCTAAATGGTGTGGTACATTAATGTGTATCACAGTGAAAATGTGAGAAAAAGTGGGgcatattgtatattatatgaaCTGTTCTTCCCTAAGGTAAATAAAATCACTGTCAAACCAAGCATTTTTATTGCAGCGTAGATTTATTGAATGTTTACAAGGTcctttcagagagagagagagaggaaaaaaaaggtctTGGCACCATCATATTTCTGAAGCCAGCCAAGCAGactctgacacactgaaaaAGCCTGGTGCACTTTCCCAAAAGCACGGCGATCTCTAGCCCTTGCAGTGGAAAAGAGCCACACACAACACCTGACCACAGACTCGGAAAGCCACATCCACCCGCGGAAAGGAACAGTGATccaaaattatgaataaattagAACAGCCAAGGTTGCAAAATAAAGGCTGACATTAAAACAGAGTCAGCCAGTTAAATACCTATTCTTACATTCTGTAATCCACAATCTCAGTTGAGATCGATTGTTTGGTTTTTGGTACATTGTGTTCTGACCAAAATAAGAGCAGATATAAGATTCATTTTCCTCACATACAGAGTTAAGACACAACTGTCCTTTACTGTGGATTGAAAGAAGCACTCCGTGACAGaataaaaactaagaaaaacaaataagccaAAGAGCATCTGGATATTTTGTTTCTggttcacatttgttttgcagaatttAATCACAGCAAAGCAGCCATTAGTATTGTCTGGAACCCTAGCAGTGCAGCAATATTTGGCTTTCTGTAAAGCGTCGAGGGAATAGTGCTGCCCTGCCAGCATTGTTgagtctgtttgtttcttttgttgtggTATTTCTTAGTAAATATCCTTTTCCTCTGAAGCAGGTGGGGGTGAGTCGCTGAGAGTGTCTAAATTAACTCCCAGACTGGGCGGGAGACTAGCATCTGTGAGTAAACAATGTAGAACTTGGATGATACATCCTCCAGatcaaagacagagagagagagagacagagagagaaaagcctTCAATTCACCTTTCTTTATGGCCGGTGCATTTGgtgtgcaaaataataataataaaaataataataaaatgaactgtGAGGGAAGTCCTCTTCTGCCTTTAAGGCCCAAATGGTCCAGTCATTTTCTCCCCTTCATGCCTGTGCTCTTTGTCAGTGGTGTGATGCCCACATTATTCCCACAGTATTCCCTTTGGCTCATCCTCTTGTAACGTAAGCAGCACTTATTCAGGTAAGGCAGACTCCGATACATCCCCAGCAAAGTGTTTCCCCAGAAAACCTTTAGTCTTTTTTTTNttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80578 lncRNA downstream 48035 25640570 ~ 25643373 (-) True G64412
TU80490 lncRNA downstream 226058 25464877 ~ 25465350 (-) True G64342
TU80489 lncRNA downstream 227292 25463540 ~ 25464116 (-) True G64341
TU80488 lncRNA downstream 229766 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 427173 25261926 ~ 25264235 (-) True G64274
TU80665 lncRNA upstream 115941 25895152 ~ 25895866 (-) False AMCG00020614
TU80672 lncRNA upstream 152488 25931699 ~ 25932142 (-) True G64477
TU80685 lncRNA upstream 155690 25934901 ~ 25935451 (-) False AMCG00020613
TU80719 lncRNA upstream 206237 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA upstream 208607 25987818 ~ 25989689 (-) True G64510
AMCG00020602 mRNA downstream 10252 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020601 mRNA downstream 96140 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020595 mRNA downstream 116798 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020597 mRNA downstream 138439 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020594 mRNA downstream 211646 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020612 mRNA upstream 82544 25861755 ~ 25867205 (-) True AMCG00020612
AMCG00020614 mRNA upstream 106839 25886050 ~ 25905598 (-) True AMCG00020614
AMCG00020615 mRNA upstream 131351 25910562 ~ 25917773 (-) True AMCG00020615
AMCG00020613 mRNA upstream 155690 25934901 ~ 25948343 (-) True AMCG00020613
AMCG00020620 mRNA upstream 181167 25960378 ~ 25965307 (-) True AMCG00020620
TU80433 other downstream 360838 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 388427 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 414991 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 448897 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 480345 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 119217 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 119217 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1466803 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2447324 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2546096 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile