RNA id: TU80656


Basic Information

Item Value
RNA id TU80656
length 912
RNA type TUCP
GC content 0.49
exon number 9
gene id G64470
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25898428 ~ 25918630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAACAGCCAGCAATAGATGCAACTGATAAATGTAGGAGAGCAACCATTTTGAAAAGGGAGGACAGAAAACACTCTGCACACTTTGTCATAATCTTGTATACAGAACAACAGAGCAGAACGGGCAGTGATGGCACACATGCTTGGCATTTCAGAATCAGTGGCTAAACTCAATGATGGGAGACTGATGCCACTGCTGGGTCTGGGCACATGGCAGAACAAACAACCTGGAAGTGTTCAAGACGCCATAGAAACAGCCATTACAGCTGGATACCGACACTTCGATACAGCCTACCTTTACAGGAATGAGGCCGAAATAGGGGAAGCCATTAAAGCCCAAATTCAACAGGGGAAGGTAAAACGAGAGGACTTGTTCATTGTCACCAAGCTCTGGCTCACTTTCTACTCCCCTGAAGACGTGCTTGTGGGTTTCAACAAGTCCTTAGAAGCCCTGCAGCTGGACTATGTCGACCTCTACCTAATGCACAGTCCTATGGCCTTGCAGAGACAAGGAGATGAGATATTCCCTAAAAAAGATGAGGAACTTCTGTTTTCTGACACGGATTATGTGGACACATGGAAGGCAATGGAGTCTCTGGTGAGCTCAGGCCGAGTGAAGAGCATCGGGGTGTCCAACTTCAACATCTCCCAGCTGCAGAGGCTGCTGTCTGTTGCCAAGATCCCGCCAGCTGTCAATCAGGTGGAGCTGCATCCATACCTGGTTCAATCAGACCTTGTGAAGTTCTGTAAAGCCAACAAAATCACTCTGACCGCTTTTAGTCCCTTTGGCTGCCCCGGAAGGCCCAAAGAATTTCACAGAGGGGCCACTGACCCAGAGAAACTCCTGGAGGACCCTGTCATCAATGACATCGCCAAGAAACACCAGAGGACTCCAGCTCAGATCTTACTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80665 lncRNA downstream 2562 25895152 ~ 25895866 (-) False AMCG00020614
TU80594 lncRNA downstream 119217 25691408 ~ 25779211 (-) True G64418
TU80595 lncRNA downstream 182971 25714135 ~ 25715457 (-) False AMCG00020604
TU80596 lncRNA downstream 183505 25714135 ~ 25714923 (-) False AMCG00020604
TU80578 lncRNA downstream 255055 25640570 ~ 25643373 (-) True G64412
TU80672 lncRNA upstream 13069 25931699 ~ 25932142 (-) True G64477
TU80685 lncRNA upstream 16271 25934901 ~ 25935451 (-) False AMCG00020613
TU80719 lncRNA upstream 66818 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA upstream 69188 25987818 ~ 25989689 (-) True G64510
TU80774 lncRNA upstream 272931 26191561 ~ 26192678 (-) True G64562
AMCG00020612 mRNA downstream 31223 25861755 ~ 25867205 (-) True AMCG00020612
AMCG00020605 mRNA downstream 160953 25728979 ~ 25737475 (-) True AMCG00020605
AMCG00020604 mRNA downstream 183526 25687275 ~ 25714902 (-) True AMCG00020604
AMCG00020602 mRNA downstream 217272 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020601 mRNA downstream 303160 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020613 mRNA upstream 16271 25934901 ~ 25948343 (-) True AMCG00020613
AMCG00020620 mRNA upstream 41748 25960378 ~ 25965307 (-) True AMCG00020620
AMCG00020618 mRNA upstream 47510 25966140 ~ 25971800 (-) True AMCG00020618
AMCG00020619 mRNA upstream 103112 26021742 ~ 26053728 (-) True AMCG00020619
AMCG00020622 mRNA upstream 190389 26109019 ~ 26129019 (-) True AMCG00020622
TU80433 other downstream 567858 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 595447 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 622011 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 655917 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 687365 25209059 ~ 25211063 (-) True G64260
TU80934 other upstream 1327384 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2307905 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2406677 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 2869950 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 3462685 29381315 ~ 29405636 (-) True G65000

Expression Profile