RNA id: TU82289



Basic Information


Item Value
RNA id TU82289
length 237
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G65815
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33981790 ~ 33982026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCAGCAGTCCCTGGACCAGTATCTCACTCTGATTGGCTTCAATCAGTCCCTCGAGCACCACCCACTCCCCTTTCTCACGCCGTGATTGGAGGATGTAGCCTGTGACGGGCGGAGACTGCAAGAGGGGTGGCAACCACTGCAAGATTACGCCTCCTGCACTCTGATTGGCCAACAAGGACCGGGGCGGAGCCAGAATGGGGATGGACTTCACTGTCGGTGGGGGTTTGCTCTGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82287 lncRNA downstream 19599 33961177 ~ 33962191 (-) True G65813
TU82240 lncRNA downstream 129164 33805701 ~ 33852626 (-) True G65776
TU82241 lncRNA downstream 129164 33838247 ~ 33852626 (-) False G65776
TU82248 lncRNA downstream 146276 33831735 ~ 33835514 (-) True G65783
TU82209 lncRNA downstream 707346 33274176 ~ 33274444 (-) True G65753
TU82324 lncRNA upstream 67970 34049996 ~ 34051069 (-) True G65844
TU82325 lncRNA upstream 70434 34052460 ~ 34053108 (-) True G65845
TU82340 lncRNA upstream 134580 34116606 ~ 34116943 (-) True G65858
TU82349 lncRNA upstream 233031 34215057 ~ 34215559 (-) True G65867
TU82355 lncRNA upstream 236733 34218759 ~ 34220010 (-) True G65872
AMCG00020798 mRNA downstream 58355 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020792 mRNA downstream 774014 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 825229 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 1001265 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 1155161 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020804 mRNA upstream 10783 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 40993 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 74928 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 130617 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 226883 34208909 ~ 34211086 (-) True AMCG00020811
TU82216 other downstream 612685 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1090297 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1324771 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1371095 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1616648 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 240289 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 826748 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 880593 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1167542 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1180788 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile