RNA id: TU82324


Basic Information

Item Value
RNA id TU82324
length 1074
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G65844
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34049996 ~ 34051069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTGGCCCTTAATTCTTTGTGGCACTCCAGTGTGACATCTGTGCTAATTCCACCAGACAGGTCCCGCTGCAGCAGGGCGGCCGTGTGCATCGTTAATTGAGCAATCAGGAAATTAAACGTCTCTCCTCGGGCAGCGTAACCTGGCAACCACTGCGAGGAGACATCGGTGCAAAAGTAAGCGCttgctgttttaatttcaggATGGAAACAATGtcacccccaaccccctcctCCAATCATTATTCGGTTCTTCTGCATGAAAATCTCACATCGTCGATTATAGTCATATAGAGAAATCCCCCAGACTGCACAGctcttcataaataaacaaacagtagGACCTGAGCAGTCTAGTATCAGACTTTCTTTCAAAACTTAACTTTCTCTCCTTTCCCCAAAAGCGAAATCCCTAGTGGGTGTGTGGGGCGACCTGAGCTGTATTCAGCTTTGAACCCCCACTTTTCGCTGTGATTTCCTTCATATAATGAATGTGGATCTTAAGGAACGTAGGTGAGCCCCCACAATCACAGTCCGGCCCCCTGGAGCGGCTGAGGGGCTGTGGGGGGACTTTCTGGTGGAATGAAAAGCACTTCTCACACCGGAGTGAATGAACCGATACCTGTCCggggtatgtttttattttttttatttaattttctttgatttactttttttaaagtattttttttagcaCTGATCTGATTTTCAAAGCACTGTCCCCCAACTGTTATCCACACATCAGGTTTTGTCCAAGTCAGCTTGTGATTGAGCAAGCAGTGACCTTTGAACTCTGTCACTTACACAAACAGGCAGCTACATTCCTTTGTTGAGTTTTTAATGATTGttctcagatttgttttttggttttctttcaggTTTTATAATATGTCAAGATGCAGTatgtaaaaagtgttttttttttgtttgtttttttctgtgtctcACTCTGTAGCTGTATTATGTATCATGTGAATACATAGCATATGTGGTACAacccacattttttttaatgttctgagataaataaaaaaataaataataataatgataaacaaaaaataaagacttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82289 lncRNA downstream 67970 33981790 ~ 33982026 (-) True G65815
TU82287 lncRNA downstream 87805 33961177 ~ 33962191 (-) True G65813
TU82240 lncRNA downstream 197370 33805701 ~ 33852626 (-) True G65776
TU82241 lncRNA downstream 197370 33838247 ~ 33852626 (-) False G65776
TU82248 lncRNA downstream 214482 33831735 ~ 33835514 (-) True G65783
TU82325 lncRNA upstream 1391 34052460 ~ 34053108 (-) True G65845
TU82340 lncRNA upstream 65537 34116606 ~ 34116943 (-) True G65858
TU82349 lncRNA upstream 163988 34215057 ~ 34215559 (-) True G65867
TU82355 lncRNA upstream 167690 34218759 ~ 34220010 (-) True G65872
TU82420 lncRNA upstream 365588 34416657 ~ 34420190 (-) True G65915
AMCG00020805 mRNA downstream 22434 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020804 mRNA downstream 54271 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020798 mRNA downstream 126561 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020792 mRNA downstream 842220 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 893435 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020803 mRNA upstream 5885 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 61574 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 157840 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020813 mRNA upstream 165827 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020810 mRNA upstream 171277 34222346 ~ 34230487 (-) True AMCG00020810
TU82216 other downstream 680891 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1158503 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1392977 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1439301 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1684854 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 171246 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 757705 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 811550 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1098499 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1111745 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile