RNA id: TU82325


Basic Information

Item Value
RNA id TU82325
length 649
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G65845
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34052460 ~ 34053108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtTCCTCCAGCCAGGGCTGCCCTCCTCTGTGCCTGCCCCGGGAATGTCCCTAAGAACTGGTGCTATTGTGGGTTTGTGTCCATCCCAGTTGCACAGGGTGGCGCTCCCATCCCTCACTCGACTGGgccacagaggaggaggaggagagctaGGTCCCAACATCCAGCCGGGCCTCCCGTACACTTACTGTCGCAGGTCCTCAGGGCTGGTGTATCCATGGTGCTGAAGGCGGTCAGGACTGGGCGGGGCAGGGAGGGCCGAGGGTCGGGGGCACCAATCCTCTAGTGAAGCTGTCTCAGCCTGTGGATTGAGGAGTGCCGAGCCGCACACCTGTGAATGAGAGACCAGGAGGGCGACGCTCGGCCCAGCCCGGCCCTGCCCTGTCAGAGCTTGTTTACAGATGCGTAGATATGcagctgtgtctgtctgttacaCACAGGCGCAGTTCGGTGCTCAAGAGCTGATCGAGGTGCTTTCAAGGTGTCAAGCTTACTGTATCTcttgttatttctgttttatttacactggcacaacagacaaaaaataatcgCTTAACTGGGGCTTTTGGAAAATCATtgctctgttttattgttttgttttttaatgtgttcagatttttttttttttttttggttataatgttatgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82324 lncRNA downstream 1391 34049996 ~ 34051069 (-) True G65844
TU82289 lncRNA downstream 70434 33981790 ~ 33982026 (-) True G65815
TU82287 lncRNA downstream 90269 33961177 ~ 33962191 (-) True G65813
TU82240 lncRNA downstream 199834 33805701 ~ 33852626 (-) True G65776
TU82340 lncRNA upstream 63498 34116606 ~ 34116943 (-) True G65858
TU82349 lncRNA upstream 161949 34215057 ~ 34215559 (-) True G65867
TU82355 lncRNA upstream 165651 34218759 ~ 34220010 (-) True G65872
TU82420 lncRNA upstream 363549 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 461260 34514368 ~ 34515898 (-) True G65957
AMCG00020805 mRNA downstream 24898 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020804 mRNA downstream 56735 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020798 mRNA downstream 129025 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020792 mRNA downstream 844684 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 895899 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020803 mRNA upstream 3846 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 59535 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 155801 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020813 mRNA upstream 163788 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020810 mRNA upstream 169238 34222346 ~ 34230487 (-) True AMCG00020810
TU82216 other downstream 683355 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1160967 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1395441 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1441765 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1687318 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 169207 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 755666 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 809511 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1096460 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1109706 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile