RNA id: TU82349


Basic Information

Item Value
RNA id TU82349
length 503
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G65867
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34215057 ~ 34215559 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NTGTTGTCTTTCCCCTGTGCTGAGATGAAGTACCGGGTCATGCTGTGGGCTCCCCCCGCTCGATCAACTGCTTTTCTCCTCCAGCCCTGATCAGAAACGCGTGATCCGGGTTGAAGTCGACCCCCCCCAGCCGGACGATTTAGGTCCAACTCTAAACGCTCTGATAATGCAGAGAAGCTCctccacagagacagagagaggaggcgGTTTGGCAGCCCGGCGCCCGCTGGGGAAACGCACTGGCCCCGACCCTCCCATGTGTGAGTCCCTGCGCGGCGGGGGGGCCTGGCCTTTTCATGTGAACTCTCTTATGCGCCTTGTCTGTCTTTGAGTGAGACGCACAAGATCCCTGCTCTGAAGACCTCGTCCGGACTCGGGGGATCCCTGTTACTGAGGGGAACTAAAGTACAGGAGCACAGGGCTCGAGTATCCTTTCTTAGAAGTTACTGCCATTCAGTGTTACTGACCGGTGGATCTgctgtaataaaatgtttttttttaat

Function

GO:

id name namespace
GO:0036038 MKS complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0035869 ciliary transition zone cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82340 lncRNA downstream 98114 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 161949 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 163988 34049996 ~ 34051069 (-) True G65844
TU82289 lncRNA downstream 233031 33981790 ~ 33982026 (-) True G65815
TU82287 lncRNA downstream 252866 33961177 ~ 33962191 (-) True G65813
TU82355 lncRNA upstream 3200 34218759 ~ 34220010 (-) True G65872
TU82420 lncRNA upstream 201098 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 298809 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 531382 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 533568 34749127 ~ 34749329 (-) True G66003
AMCG00020811 mRNA downstream 3971 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020807 mRNA downstream 101368 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020803 mRNA downstream 139453 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020805 mRNA downstream 187495 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020804 mRNA downstream 219332 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020813 mRNA upstream 1337 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020810 mRNA upstream 6787 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020812 mRNA upstream 24330 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020815 mRNA upstream 74428 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020821 mRNA upstream 217866 34433425 ~ 34441728 (-) True AMCG00020821
TU82216 other downstream 845952 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1323564 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1558038 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1604362 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1849915 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 6756 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 593215 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 647060 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 934009 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 947255 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile