RNA id: TU82355



Basic Information


Item Value
RNA id TU82355
length 229
lncRNA type intronic
GC content 0.50
exon number 2
gene id G65872
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34218759 ~ 34220010 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgtctctgtcctgtTGTGTCCCTCTGTACTGGgtgtctctgtcNTGGTTTGTGTCCCTCTGTACTGGgtgtctctgtcttgtgtgtgtctctgtcctgATGTGTCCCTCTGTGCTGCATGTgtttctgtcttgtgtgtgtctctgtcatgtgtgtgtctctgtgctgggtGTTTATGtcctgtgtgtccctctgtgctgcatgtgtttctgtcttgtgtgtctctctgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82349 lncRNA downstream 3200 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 101816 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 165651 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 167690 34049996 ~ 34051069 (-) True G65844
TU82289 lncRNA downstream 236733 33981790 ~ 33982026 (-) True G65815
TU82420 lncRNA upstream 196647 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 294358 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 526931 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 529117 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 529434 34749444 ~ 34750150 (-) True G66004
AMCG00020811 mRNA downstream 7673 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020807 mRNA downstream 105070 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020803 mRNA downstream 143155 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020805 mRNA downstream 191197 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020804 mRNA downstream 223034 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020810 mRNA upstream 2336 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020812 mRNA upstream 19879 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020815 mRNA upstream 69977 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020821 mRNA upstream 213415 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020822 mRNA upstream 223276 34443286 ~ 34456490 (-) True AMCG00020822
TU82216 other downstream 849654 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1327266 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1561740 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1608064 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1853617 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 2305 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 588764 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 642609 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 929558 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 942804 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile