RNA id: TU82420


Basic Information

Item Value
RNA id TU82420
length 401
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G65915
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34416657 ~ 34420190 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAAAGATGCTCATACTGATTGGGAAAACGACTGGGGAGGGACGGTCAGAAGTCCTTTCGGTTTCGTGCGTGAGATTCGTCTCTCACCCACAAGTCCTGCGGTACTGCTGGCAGGCTGTGCGCACTCACGCCACTGTATGCTGTGCGGCCGTGTTTCCGACGTTGTACGGTTGCTAATTGCTCTGCAATAAAGGTTTGTCATTGGACGTATACTTGACCGTACCACTGGAGGATCCTGAGCTGGAGAAGGCCACCACCACCCCAATCAGGACGGCAATCACCACCAGGACCACCGCAACCACCAGCAGCTTCATCTTCATGTGCTCCCAGCGTTTCTTGCGGACCACCTTAGTCGTGGTCTTGACGAAGGTCTTGCTCTGGAGGGAGAAATAAAGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82355 lncRNA downstream 196647 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 201098 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 299714 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 363549 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 365588 34049996 ~ 34051069 (-) True G65844
TU82465 lncRNA upstream 94178 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 326751 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 328937 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 329254 34749444 ~ 34750150 (-) True G66004
TU82573 lncRNA upstream 418571 34838761 ~ 34841242 (-) False AMCG00020837
AMCG00020815 mRNA downstream 101945 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020812 mRNA downstream 144491 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020810 mRNA downstream 186170 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020813 mRNA downstream 195977 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020811 mRNA downstream 205571 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020821 mRNA upstream 13235 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020822 mRNA upstream 23096 34443286 ~ 34456490 (-) True AMCG00020822
AMCG00020830 mRNA upstream 99010 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020829 mRNA upstream 109593 34529783 ~ 34553326 (-) True AMCG00020829
AMCG00020828 mRNA upstream 149422 34569612 ~ 34573502 (-) True AMCG00020828
TU82397 other downstream 176960 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1047552 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1525164 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1759638 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1805962 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 388584 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 442429 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 729378 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 742624 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1259242 35679432 ~ 35684555 (-) True G66279

Expression Profile