RNA id: TU82465


Basic Information

Item Value
RNA id TU82465
length 1531
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G65957
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34514368 ~ 34515898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNttgtccacactgaatttcatctgccaggtgtcgacccacaactgaatattatcttaGTCcttttgaatagcctgtgctgcggAAATTATaactgctgagccacctattttactatcatctgcaaatttgacaagtttgctaactatcgcagagtccagatcattaacatagattagaaacagcaaaggccctaatactgatccctgtggaactccactaacaacctcactccagttagaagcgactcctcttatcgacaccctctgtttcctatacatcaaccagttcataatccatctacttacattaccctgaatgcctacagcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagctttttgaaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaagaactctaatagattagtaagacatgatctgcctcatctaaacccatgctgactatctccaagattaagatgctcctcgatTTTCAGTCTAATAATTTTTCCCAAAATGTTataagtaatgcaggtgagactgattggtctgtaatttcctggctcagttttgtcccctttcttgtggattggtgtgacattagcagttttctgaccagttggcacatcccctgttctaagtgtcttttggaatagtttagttagctaataaataatttccctcatttctttaagtactgttggaaatataccatctggcccaggtgatttgttggtttttaattctgctagtccctttagtacctcctcctcatttatcctgatctctcttagggtttgactggactgattgttaacctgtggcatgttatctgtcttttcttttgtaaaaacctctgtgaaatactcatttagaacttTTGCCActtcttgttcgttttccaagatacttccatgtttgccctttatctgtttaacttcctcctttattgacctcttgctgttgtagtattgaaaaaagctcttagttgcattaattttagctccaagagctgtttctttctatttccctctttgctttcctgatccctcacttaacatctctttgcagttcaacatattctttgtattttgttttgtgctgccTTATACCTTCaagatttgcttttctaaaattgtagaccattgtttttgacttggtccttgttttttgaaagaatgcctcaaagttaaccatattgtgatcacagtttgccagtGGATCTGTAACTAGTGTCTTTCCGTATCAAatcactctctctggttggttccctgacaaattgagttagaaagcagtaatttgccttctcaaccatttctatttctgcttctgcaatcgaaactgggctttcccagtctatgtttgcaaaattgaaatcccccattataacagccacatccttgctacatgcagtcctgattacattgtacaatgcaacatctttctgaatatctgaattgggttgtctgtaacacactcctaccactaatcctccaga

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82420 lncRNA downstream 94178 34416657 ~ 34420190 (-) True G65915
TU82355 lncRNA downstream 294358 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 298809 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 397425 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 461260 34052460 ~ 34053108 (-) True G65845
TU82523 lncRNA upstream 231043 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 233229 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 233546 34749444 ~ 34750150 (-) True G66004
TU82573 lncRNA upstream 322863 34838761 ~ 34841242 (-) False AMCG00020837
TU82629 lncRNA upstream 382886 34898784 ~ 34942966 (-) True G66087
AMCG00020822 mRNA downstream 57878 34443286 ~ 34456490 (-) True AMCG00020822
AMCG00020821 mRNA downstream 72640 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020815 mRNA downstream 199656 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020812 mRNA downstream 242202 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020810 mRNA downstream 283881 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020830 mRNA upstream 3302 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020829 mRNA upstream 13885 34529783 ~ 34553326 (-) True AMCG00020829
AMCG00020828 mRNA upstream 53714 34569612 ~ 34573502 (-) True AMCG00020828
AMCG00020832 mRNA upstream 203806 34719704 ~ 34728364 (-) True AMCG00020832
AMCG00020834 mRNA upstream 213229 34729127 ~ 34741671 (-) True AMCG00020834
TU82397 other downstream 274671 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1145263 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1622875 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1857349 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1903673 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 292876 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 346721 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 633670 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 646916 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1163534 35679432 ~ 35684555 (-) True G66279

Expression Profile