RNA id: TU82585


Basic Information

Item Value
RNA id TU82585
length 1628
RNA type TUCP
GC content 0.49
exon number 2
gene id G66054
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34862619 ~ 34865305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTACAATATAAGTTTATTCCACCAGAGGGTGCTAGAGTTGTACAATAGATCATTTTCAATTAcaagctaattaaacaattgttaattatattagggaaaaaaataataaacaagaatCCCCAGCAGCATCATTCTTTGATCCAGTCTTTGCACAACGTCCGACCCGGGCAGAAGTACAGAAGACTGAAATCTACGTTCACAATTTGGCTCGGTTATCATAACCGTATATAGACAagcatagaaaaataaactgaaaggcTACGATGTATTATTTCTATTActctctatatttatttttacagattaaTAAACACTCGAAGACAGAGTGAAGTGTAGGTGGTTTATATTAAAACCGGGATCTGGCACTCGCTCCCAGCATCCAAACACTGCCCAGCGTGACTCCCTGCTCCTAAAAAGTATTAACAGGAAGCAATCTGCACACACCTGTCGCATGTGATGTAAAACAGTGAGCAAAGGAAGGCAGCGTAATCAGCGTTGCCGTTATTCCAGCACCATGGTAGCAGTCTGGGAAGAAGCACTTCTCAGACACAGCGGACCAGGGGTCAGGTGCAGATTGGGTCAGGTGACCTCACCAGGGTGGGAGACACGGGGAGCCCTTCTGGGGTGAGCACTGAGGACCACGGCATCAGAAGGAGTCTGGGCTGCAGTGCTTAGACAGGGCAGTTTGTGTGACCTAGCCCTACTGCAGGCAGTCCAGGCCAGCAGTCACAGAGAGCTGTAGCTGCACGTACATGtgcattattacaaaaatacagaaaaatagtCTGTGCCTGTGCTCATCTTATGTACaataaatatggttttattattCCGCTGTTATgacatgcattttatatgtgtAACTCCccctgtattgtattattgctgtGATTTTAAACTTCTACTCCGGTTTGCGTAGTGCAGGAACCACACAgtgtaaaaaactaaacacccccaaacaaaacaaccggcttaaacaaaaataaacagatgttgTGCATGCAGGCTGGAAATAAGGTACAACCGCCCCCAACAGCACGCCTCCACCCCACGCTGTCCCTGTCCCAGGTCAGACACGGGCCCCGGGGGAAGGGCTTTGCTCTTCTCCACACAATCGCATCAGATTCCCCTTTCAAACATTTTCAGCTAAAAAAAgggagtaaaataaaatacaatacatccAAGGATGACAGACAGATGGTCCCCTTCTTAGAAACCACTACCTCCTGCCCACCAGTCTCTCTATACCACAGGCCCTGCACAACCACACTGTCCCTTAAAAGGGGCTGTGCAGGGATAGAGGGATACAGAATGGTGTGCGgCGTTTCTGACCAGTGGAGCCACATAGTTAATTGTAAGGAAGTTGACTGGAAGCTACTGCTCCACCACAGTCCTGGGTCCTCGCCTccgtctctgtccctctctgccTCCCAGCCCCCGTCCTGTACTCCGATTGGCggatggggaggaggaggagggcctCAGTGCTGCCCCGCCTCCCTGATGCGACAGGCCACTGCGGTGATCAGGGCCGCCCCCTTGCCGCTGCCGTCCTCCGATTGGACGAAGGAGACGTCGCACTGCGGGGCCAGGTCCCGGACGGTCTCGTGCAGAACGGTGGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82573 lncRNA downstream 21377 34838761 ~ 34841242 (-) False AMCG00020837
TU82526 lncRNA downstream 112469 34749444 ~ 34750150 (-) True G66004
TU82525 lncRNA downstream 113290 34749127 ~ 34749329 (-) True G66003
TU82523 lncRNA downstream 115258 34746941 ~ 34747361 (-) True G66001
TU82465 lncRNA downstream 346721 34514368 ~ 34515898 (-) True G65957
TU82629 lncRNA upstream 33479 34898784 ~ 34942966 (-) True G66087
TU82668 lncRNA upstream 138273 35003578 ~ 35077562 (-) True G66123
TU82675 lncRNA upstream 214373 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA upstream 214373 35079678 ~ 35081867 (-) False G66126
TU82674 lncRNA upstream 216660 35081965 ~ 35095653 (-) False G66126
AMCG00020837 mRNA downstream 21296 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020838 mRNA downstream 35990 34818213 ~ 34826629 (-) True AMCG00020838
AMCG00020836 mRNA downstream 48325 34808604 ~ 34814294 (-) True AMCG00020836
AMCG00020839 mRNA downstream 71563 34787271 ~ 34791056 (-) True AMCG00020839
AMCG00020831 mRNA downstream 91977 34763193 ~ 34770642 (-) True AMCG00020831
AMCG00020845 mRNA upstream 24942 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020849 mRNA upstream 144586 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020854 mRNA upstream 220512 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020851 mRNA upstream 235702 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020852 mRNA upstream 259110 35124415 ~ 35127755 (-) True AMCG00020852
TU82568 other downstream 48450 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 622922 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1493514 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1971126 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 2205600 32655134 ~ 32657019 (-) True G65641
TU82718 other upstream 284263 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 297509 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 814127 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 948664 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 1110459 35975764 ~ 35986696 (-) False AMCG00020900

Expression Profile