RNA id: TU82811


Basic Information

Item Value
RNA id TU82811
length 288
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G66232
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35433278 ~ 35433565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGGTTTTCTCGGGGCCGCCTGGCTGAGCCGGCACCAGTGTGTGTGAGGCTCACCGTGACCGCACTGGAGCTGAGGTTCCCACCAGGCAGGGCGGCCCGAGGGGACTGGGTGCTCCTGCTGTTGGTCAGTTGCCTGCAGTTGTGTGAATCTGTTCGGTGGTCAGTCAGCTGCAGTGTGAGTTTTGACTCCTGCTCCCAGGGAGGGAGGGCAGAGCAGGGCAGTGTGCacatctgagtgtatggcactTTGTTTCAATGTGTAGAAAAGCGTATCTGCTCACAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82807 lncRNA downstream 3884 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 83779 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 180609 35252402 ~ 35252669 (-) True G66181
TU82716 lncRNA downstream 297715 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 337625 35081965 ~ 35095653 (-) False G66126
TU82845 lncRNA upstream 2725 35436290 ~ 35502312 (-) True G66259
TU82874 lncRNA upstream 217415 35650980 ~ 35692460 (-) False G66279
TU82877 lncRNA upstream 261403 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 261403 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 269198 35702763 ~ 35703073 (-) True G66284
AMCG00020865 mRNA downstream 61022 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020867 mRNA downstream 84052 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020866 mRNA downstream 123207 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020862 mRNA downstream 177078 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020861 mRNA downstream 194679 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020871 mRNA upstream 6464 35440029 ~ 35445018 (-) True AMCG00020871
AMCG00020870 mRNA upstream 13289 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020873 mRNA upstream 153256 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020877 mRNA upstream 185059 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020881 mRNA upstream 203485 35637050 ~ 35658112 (-) True AMCG00020881
TU82718 other downstream 263099 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 263099 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 567973 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 619109 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1193581 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 245867 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 380404 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 542199 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1606882 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1631598 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile