RNA id: TU82838



Basic Information


Item Value
RNA id TU82838
length 328
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G66258
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35552903 ~ 35553230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTTGCGCTTGCGGTCTCGGGACCGGTTCCTCTTGtacttcttctcctcctctttctccttctgCTCCTGAGCCGCCAAGGCTTCCAGGTCCTTGTTCTTGCGGAGCTGCTTCGCTGCCTGTGCCATGCTGCCCGCGGACTCTGTACCCTCCCAGGTGGACTGGCTGCAAACACATCAACCACTGGAGCCCGAGCTTCCTCTCGGCTCCGCACTCGCCCCTCGCCTGCACGCTCTCCACacgctggctggctggctggctggctgtgaAGAGGGCTCCTCCAGTTTCTCGCTCTCTCGCgttctctccccccccctcctcgATTTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82810 lncRNA upstream 119345 35433268 ~ 35433558 (+) True G66231
TU82709 lncRNA upstream 382628 35167068 ~ 35170275 (+) True G66151
TU82704 lncRNA upstream 403485 35148214 ~ 35149418 (+) True AMCG00020855
TU82612 lncRNA upstream 526674 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 802752 34749498 ~ 34750151 (+) True G65995
TU82891 lncRNA downstream 162815 35716045 ~ 35716249 (+) True G66290
TU82924 lncRNA downstream 204878 35758108 ~ 35761032 (+) True G66319
TU82931 lncRNA downstream 215011 35768241 ~ 35768571 (+) True G66325
TU82953 lncRNA downstream 245480 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA downstream 260513 35813743 ~ 35817779 (+) True G66348
AMCG00020872 mRNA upstream 136058 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020869 mRNA upstream 140108 35405143 ~ 35412795 (+) True AMCG00020869
AMCG00020868 mRNA upstream 151379 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020863 mRNA upstream 196387 35354706 ~ 35356516 (+) True AMCG00020863
AMCG00020864 mRNA upstream 265085 35277860 ~ 35287818 (+) True AMCG00020864
AMCG00020875 mRNA downstream 174522 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020874 mRNA downstream 193926 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020883 mRNA downstream 266926 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020884 mRNA downstream 298409 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020891 mRNA downstream 356122 35909352 ~ 35926494 (+) True AMCG00020891
TU82706 other upstream 387918 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 544581 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 765429 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 1141283 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1493438 34059111 ~ 34059465 (+) True G65830
TU82915 other downstream 193995 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 314163 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 701469 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1361585 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4767883 40321113 ~ 40321821 (+) True G67108

Expression Profile