RNA id: TU82845


Basic Information

Item Value
RNA id TU82845
length 745
lncRNA type read_through
GC content 0.36
exon number 2
gene id G66259
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35436290 ~ 35502312 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGGGTTGAgtatttatatattttttctttttttgtttgtattggaTTTGCGCACAGGACAGGGGTGCGATCGCTGTGTGCTGCTCAGTGTGTTCAGGCCCAGTACGCTGTCGCTGTCTCTGGTCGTGGATATTGAGAAACATCCCGGCCTGTCGAGTCTGCACTGGAGCGACTGTGACAATTGCTGGCAAGAAGGGACAGGGTAGAGGGCTCCCATTTGAACACACGGAAAGACTTAAAAAAGACATTGAACATAAAAAAGAACCTGCAAAAATATTAACTGTTGCAAAAACTAGAGAACATTATACTCCTATAGAATGGTTTGAAGTTATATTAACGCAATAGCATATTACTATAGACTAAGGAATGCATCTGCGCACATGCACAGAACAAtaaagtttttaatatatatataaatatataaaatatatttcattagaATGCCTATGCACTATTACTTGCTATCCAGGACTAGAGATATGTTATGGCTATACCTAGCAACTTAGCTATGAAGAGTCTAGGGTCATGGGGAATGCCTGAAATCTGTGGTATCGAGGCTTTGTAGgtattttaacttgttttcttttctttttttattgttatggagaaaaaaaaaagttaaaaaaaatatatatatgatgagcCTTTTAATCAGATTCAGTCTGAAATGAAGATATGTATAGACAGTTTTCCCTGTACACCAGCTCAAATCATTTACAAacattaataaagaaagaaatcaac

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82811 lncRNA downstream 2725 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 6896 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 86791 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 183621 35252402 ~ 35252669 (-) True G66181
TU82716 lncRNA downstream 300727 35134978 ~ 35135563 (-) True G66154
TU82874 lncRNA upstream 148668 35650980 ~ 35692460 (-) False G66279
TU82877 lncRNA upstream 192656 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 192656 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 200451 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 269172 35771484 ~ 35771686 (-) True G66327
AMCG00020865 mRNA downstream 64034 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020867 mRNA downstream 87064 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020866 mRNA downstream 126219 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020862 mRNA downstream 180090 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020861 mRNA downstream 197691 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020873 mRNA upstream 84509 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020877 mRNA upstream 116312 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020881 mRNA upstream 134738 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020882 mRNA upstream 169218 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020879 mRNA upstream 177121 35679433 ~ 35690340 (-) True AMCG00020879
TU82718 other downstream 266111 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 266111 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 570985 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 622121 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1196593 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 177120 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 311657 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 473452 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1538135 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1562851 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile