RNA id: TU82875



Basic Information


Item Value
RNA id TU82875
length 1465
RNA type TUCP
GC content 0.47
exon number 4
gene id G66279
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35650980 ~ 35692460 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


NNNGGCACGGCGACTGATACAGTTGTACGGGACCCCTGACAACATCGACGTCTGGCTTGGGGGAGTGGCTGAACCTTTTGTGAGGGGGGGGCGAGTCGGGGAGCTCTTCGCCTGCATCATCGCCACGCAGTTCCAGAAAATCCGGAGCGGAGACAGGTTCTGGTGGGAGAGGAAGGAAGTGTTCACCAGCAATCAGCAGGCCGCCCTCCGCCGAGTTCGGTTAGCCAGGATCATCTGTGACAACACGGGGATCACAGACGTCCCCAGCGACCCCTTCCTGTACAGCCCCCGCGGCCAGAGTTACACCAGATGCTCCAGCATCCCCACCTTCGACCTGAACCCCTGGAAGGAAGCAAATTCTTCCGGATCCAGCCCACCCCCTGGACACAAAACCTACACTGGACAGCATGGACCCCAGGGTGCAGAGGGACCCAGAGGAAATCCTGGACCACTGGGGGCCCCAGGTCTGCAAGAAGCCAAGGGCCcgcggggagagagagggccTCCCGGTCTCGCCACCAACCTCCCGAAGTCTGCCTTCTCCACCCGGCTGGGCTACAGCAACCCCCCCCCAGACCGCCCCATCGTGTTCCGGGAGACCATCTACAACGGGCAGAACCATTACGACAACCAGACAGGGGTGTTCACCTGTGTCTTGCCCGGTGTGTACGAGTTCAACTTCTCCTGCAGGCTGTACAGGAATCTGGGCAACATTGAGCTGAAGAAGAATGGTGTGAACGTTGGGCACTCCATCAGCTCCTACAGTGGGGGCTACATCAGCGCCACAGGCAGTAGCATGGTGCCATTGGAGCAGGGAGACCAAGTCTGGCTGCAGTCCAGCTCCGGTGGCAACACCCTGACCGCAGAGAGCTTCTTCTCGGGGCACCTGATCTTCTCTGTGTAAATTGTGCACACGGCCTGTCactttctgtcttttcttttaattcatttaagaTCAGAATTACTTTTATATAATGCGTTTATGTTTTGATTCTAAATTTGTATCCCATAAATCTTATGCCTCAACTGTAGCAAGCTttcaatagaaaatacattaaaaaaaaaaaatcccaaaagtctggtaaagtttttaaaaatgaaaagtcaaTGAATGTTATCTTTGTCTTCTGACTGCAATTCACTGGAAGTGTAAAACAGCAGAATTCCTACTTTTACCAAAACCATATTGGGATTCCTGGAAACATAAATAAGTGTAATAAAGTATAAGGTGAATAAACaagttattaatatatatataatagctcAGAGAGGTAATGTCATTTTCAGGCTTCCTGATCATCCCATGAAGTAATTTATGCAAATAAGCTTTGttaattatgataatttaatctcaattattattgaatattttttttaatataaaaagtctctgcatttaaattgtaatgcatGCAATGTAAGGCAAATAACtatcaaataaaagtaattaaaatacaagataaAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82845 lncRNA downstream 177120 35436290 ~ 35502312 (-) True G66259
TU82811 lncRNA downstream 245867 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 250038 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 329933 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 426763 35252402 ~ 35252669 (-) True G66181
TU82877 lncRNA upstream 10413 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 10413 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 18208 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 86929 35771484 ~ 35771686 (-) True G66327
TU83045 lncRNA upstream 241983 35926538 ~ 35937258 (-) True G66416
AMCG00020882 mRNA downstream 3532 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020881 mRNA downstream 21320 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020877 mRNA downstream 47447 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020873 mRNA downstream 88089 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020870 mRNA downstream 194007 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020876 mRNA upstream 10581 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020878 mRNA upstream 55490 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020880 mRNA upstream 75296 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020886 mRNA upstream 94488 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020889 mRNA upstream 116730 35801285 ~ 35810870 (-) True AMCG00020889
TU82718 other downstream 509253 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 509253 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 814127 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 865263 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1439735 34222315 ~ 34239697 (-) False AMCG00020810
TU82986 other upstream 129414 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 291209 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1355892 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1380608 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1947245 37631800 ~ 37632576 (-) True AMCG00020943

Expression Profile