RNA id: TU83045


Basic Information

Item Value
RNA id TU83045
length 3151
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G66416
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35926538 ~ 35937258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTGCCAAGCTCATGATCTTCTCAGTTGCTTTTGTCAAATGTAAATCACAACACAAATATTCCGGTTAGGTTGATTTTATTAACTGAACACACTGCTCTgtagtgaaagagagagagaaaaaaaaagaccacaattaaacagacaaataaattattaattcttAAAAATGGGAATAAGCAGATAAAGTGGAGCTTCTTCCCATGGGCCGATATCCTTCCACAACGGTTTCAATATTTGAACGTGAATTCTCCGTAATTAATTAGAAATCCAAGACCGTTCTCTCTGGTCTAAACAACTGCACACGACACTGAAAGACACCTGGCTGAGTAAGTACAGGAATTATTCCTCTTCCATTTGCCCACAAAATGAGGCtaaataatgtactgtattgtactgtactacacatGGCATAACCTGTCAAGTCAAAAGCATAATGGAGAGCTGAGAAAGCACTTGTAAGGCCTTTTGTGCTTCTGTGCGTGGACTGGAATGTGTGTAGAGCGATATCTGATTGCCTGAGCAGCACAAAAGCAGTGTTCAAGGCGGGCTCAGTTTCAGACGGGTGACGGGCGGCTCGTTCAAGTGCTCAGGCCTCCCTCCCTGCGAGAAGAACAGTCACGGGCAAAACAGCAGATTATAAATAATCACACAGACGGAAACCAGAGAAATAAACGCAATAACTGGTCAGAAAGTGGTTACAAATATACTGTGAACCTGCGACATTTACAGCCCAAACCCACcgaccttaaaaaaacaaagtataatttaaacGAATGTCTAGCTTGCAAGCAATGTGCCACTTCTTCATTTTAAGAACCCTTCCCATgctttgattttacattttagtttcttcaGTAAAGAGACTCCTTCTCGCACATCCAGCCCCCCGCACACAGTGACAGCACTACAGCTACAATAAGTTAGAACTGCTAAAAACGTACCTTGACCTTTTCCTCCAACAGCTATCAATCATTCTGAATTAAACCCTTTGCATCAGTTCATCTACCTTTGTGAATGTGTTCAGAGATTAATTCAACTATCCAGCATCCTGCCACAACCCTGACATTAATAGTATATACAGCATGAGAACTTCCCAGAGATTAAAGGACATCCAGAGTTAGAAGCTCTGTTAGATGGGTTATAAAAAGAATACTCAGTTCAAAATGGCTGCTTTAAAGGTCTTGTTACATTCTGCCATCTACGTATAAAAAAGAGCATCTTTGTGTATTCAAAGGGGATCTTCCTTGAAAAGGCGGAAGATAAAGGGAGATTCaatcttgtctttttttcttgtatttctccTTCCCTGATCCTGACCAAAAACGAAAAAGGTCACAACACGTCCTCCACAAAccccaagtaaaaaaaaaaaaaaaaaaagtcttcagaTCTCTAGGCATCCCCGAGAGCCTGAACTGGGGGTTTGTAAAGGGCGTGGTCACAGCTGTGCCCTGTCCAGTttttttgtttagttttatgtaAGTGGGTGGAGCTAGTATGATTTtaatgaaatcattaaaaatattaatttgctgtTAATCAGTTTGATTCACTTATTGTGTTAAGGCTGGATTGTGAGGAAGTTATTTGTAGCTCCGCCCCCAAACCAACAGACACGCCAAGAGAGGTGTGAGCGCTATATTTCAGATATTTCTGTACGTGACTCTTGCTTGAAAACCGGTattgctaaatatttttttgaaagtaAGAAACCACTGCTCTGTTCTGTACATCACAGTATCACCACCTTGATACTCCTGTGTGGGACAGCAACACTTCAGAAGTGCTAAGGCCTACAAAGTCTTAACATTGATCATAACCCTACCTCAGAAGCCAAATGTCTTTGCATCTTCAGAACATGTAAAgtacatcttatttatttatctagtGGCTCTATAATACACAGCAATGTCCTTCAAGCTCGGTCCCATGGGGCAGAGGTAAAACCCAGTAAACCCAGTACCTGGAGGACCAAACTAGAGCTGTCAATGACTGAATTAACCTACTAATGTGATCTGTATAACACATGACACATTATTTTAAGGCCCTGTTACAGGTCCCTGGTTTAACAGGCTTTTGTCCTTCAAGGTGTTCGGCCTGTAATGTAATTTGCATGCCTGTAGACAAATATTTGATTCATCCAGTTAATCGGCTAATCAGATGGGAGCCTGGTAGGGACAAATGCCTGGAAACAGCGCTGCCCTCGATTGAGGAGGCCGGAATCGCCTGGGTTGTGACCCCCATGGGGACCGGAGATGGAAGAACACTGagttaaacacaaataaaataatttctcaaaCCTACTTTACACAAATGCAggacatatttacatttagaacAAATTgaaagtgtatatattaaaattaaaataaaaagatcaggtttatatattattttaaggcACGCGTACAAATCTGGACAGTCTGTCTGACTGGGACGTTGTGCATACACAGTGACAAGGACAAGGCATTTGTTTCCTTAAACGGCTCTTCCCCTCCATCCTTTCCCCAGTAGTTGCCAACAAACTGTCTCTGATCTCTACATTGTATTTGACACACACTGTTAATTAAGCATGAGACAGCAGGCTAgactaaaaacatacaaaacatggaaaactttttttagtttgttttcaattcaggCTTAAAATATGTAAGAATGTGCATACGCTAACTAGGACAGGGGACGTATGGGCATCCCGCAGACGCACTGCGGCAAAGTCAGAACACGGTTAACAGAAGCTGCTCCCGGGTCGCAGGCTGTGATCTGGAGAGCCGCCAGCAGTCTCTACAGTGTCTACAGGGGACATAGAGCAGTCCAGTCCTTGAATCCTGGGGCTGGGGAGCTTGCAAGACCCCAACACGCTGAGCTGCTTTCTGTTAAAACCCTTTGCTGCAAGGGCCTCTGCTTCTGTCTGACCTCACTCTGATGGACACTGATCCTTAACTGTGGTCAAAGAATGGCCATCGACAAACCTGTGGATATGAAAGTGCCAGCCTTCAAGAGTTACTATATTCTTATCATTAttgtcatatttattataattattattcaacatTGCAATTTGCGCTGCTATGTTGCCTTCTTAAGCAGCGCAAAAGCTGCAGTTAATGGTGGGCTATAGCTCCCGGCCGTCCCTTCAGAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82933 lncRNA downstream 154852 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 223465 35702763 ~ 35703073 (-) True G66284
TU82877 lncRNA downstream 229569 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA downstream 229569 35694968 ~ 35696969 (-) False AMCG00020876
TU82874 lncRNA downstream 234078 35650980 ~ 35692460 (-) False G66279
TU83061 lncRNA upstream 38506 35975764 ~ 35986696 (-) True AMCG00020900
TU83143 lncRNA upstream 298514 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 340892 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 810257 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 913812 36851070 ~ 36851636 (-) True G66535
AMCG00020888 mRNA downstream 46450 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020885 mRNA downstream 79481 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020887 mRNA downstream 107404 35813873 ~ 35819134 (-) False AMCG00020887
AMCG00020889 mRNA downstream 115668 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020886 mRNA downstream 135990 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020900 mRNA upstream 40216 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020897 mRNA upstream 55139 35992397 ~ 36000532 (-) True AMCG00020897
AMCG00020899 mRNA upstream 68706 36005964 ~ 36010739 (-) True AMCG00020899
AMCG00020898 mRNA upstream 104601 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020904 mRNA upstream 153283 36090541 ~ 36100893 (-) True AMCG00020904
TU82986 other downstream 106708 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 241983 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 756359 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 756359 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 1061233 34862619 ~ 34865305 (-) True G66054
TU83060 other upstream 38506 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1103189 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1127905 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1694542 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 3112958 39050216 ~ 39104867 (-) False AMCG00020970

Expression Profile