RNA id: TU83184


Basic Information

Item Value
RNA id TU83184
length 567
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G66535
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36851070 ~ 36851636 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCCCCGTAGAAGCACGACTCCGAGACGGGCGGGCAGCGGGCCGCCTCGCAGATCTCCGGACACGGCGTCTGTCTCTTCTTCAGTAGCCGCGGATGGACCATAGACACCAAAACCATAAACGCCATCCACTTCATCGCCATGGTACAGTATGTAGTCCGGTTTTGGTCAGATCAAATAAACTTGAAGCaactttttggtttgtttgcgtgaattataaatgctgttttatagattatttatttagaataaaaaagACCGCAACCGTTATTGGTTTAGGATACATTTTCATCCGCGTTTTGGTTTTTGTGCGCAATGGTGAAAGTGCACCCTCTCCAAACCAATTGAAACAAGTTTGCTACTTTCTATAAAAAGCGGTTATGTGAATGAAAGTATGCacctaaatatttgaataaagtgTAATATAGTAAATTAACCTTAAACAAGGGAAATCCTCATAATCATAGTCGTGCGCTTTCTGTTGCAAATGTGGTTTTGTATCATTTTTACGCAGCTGGAGGTTCAACTTCCAGCCTCTCTCCAAAACACTGACGGACCCTGCGCGCTT

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83176 lncRNA downstream 103327 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 568543 36278150 ~ 36282527 (-) True AMCG00020911
TU83143 lncRNA downstream 614143 36235772 ~ 36236927 (-) True G66499
TU83061 lncRNA downstream 864374 35975764 ~ 35986696 (-) True AMCG00020900
TU83045 lncRNA downstream 913812 35926538 ~ 35937258 (-) True G66416
TU83185 lncRNA upstream 17781 36869417 ~ 36870155 (-) True G66536
TU83275 lncRNA upstream 162345 37013981 ~ 37019796 (-) True G66613
TU83352 lncRNA upstream 416146 37267782 ~ 37268223 (-) True G66685
TU83423 lncRNA upstream 643487 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 885127 37736763 ~ 37739197 (-) True G66786
AMCG00020913 mRNA downstream 524241 36284882 ~ 36326829 (-) True AMCG00020913
AMCG00020911 mRNA downstream 568541 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020912 mRNA downstream 594560 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020903 mRNA downstream 672809 36175349 ~ 36178261 (-) True AMCG00020903
AMCG00020905 mRNA downstream 707977 36128362 ~ 36143093 (-) True AMCG00020905
AMCG00020915 mRNA upstream 20698 36872334 ~ 36874433 (-) True AMCG00020915
AMCG00020917 mRNA upstream 25839 36877475 ~ 36894127 (-) True AMCG00020917
AMCG00020918 mRNA upstream 57523 36909159 ~ 36913434 (-) True AMCG00020918
AMCG00020916 mRNA upstream 62851 36914487 ~ 36931628 (-) True AMCG00020916
AMCG00020924 mRNA upstream 122773 36974409 ~ 36998756 (-) True AMCG00020924
TU83060 other downstream 864374 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1031240 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1166515 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1680891 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 188811 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 213527 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 780164 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2198580 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4748765 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile