RNA id: TU83200


Basic Information

Item Value
RNA id TU83200
length 2585
RNA type TUCP
GC content 0.43
exon number 2
gene id G66551
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36914815 ~ 36917436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCACTTATTGAACCACAGTTACATACAGTACAAACAGATGCTGAAAGACTAATAATTACGATACTTTTTATTCAGGCAATGAGATatggacaaaaatatatattagtaaacATTATAATTTCATTACATCTGTGTAAGTTTCCactttacaaatattaatgacattaaaaaagaaGGGTTCTCGTTTCTTTTTTGCgtataaaacatacacagtcAGATGGCGGCAATTCAAGAATGACGGGGAGGGAAGAAAAGGATGGATTAGTCACAGCAAAAGAACAGTATGCTCTCTGTGTTTTCAACGCGCTCTCTAGACTGATGTCGTTTTGGCAGTCGATTACAGCGAAAATGATGCGTTGCAAGGCTGATGTGCTCGGACAACTGGAGTGCATTAAAGGTCCATTTTCTATGGTCGGAGTATTGCTGGAGTGATGTCAGTGTAGACACTGCCTCGTGGTGCACAACCGTCTCCCTGCTCAGTTCTCTGATACAGGGAACGGTCAACGATGGCAGTTTGGGATTGCACCTAATTTTGGGGGCCGGTCCAAACGCCACTGTGAATCTGTCTATGTCAGGATTTTAAACTTAAAAGCCCGGGGGAAAAGAAGGAGCAAACACACCCTTGGACTCAatgtacatataaaaaaatttaaataataaaaaaagagttaaaaacatgtctctgtgtctccctgaAATGTCAATGCCAACAACAAGACGATAGGTGCTGTTCTGCTCTGACCCTCCCCCCCGGAGTCcgtgaaaatattttaaaaactttgtTCATTTTACAAGTATACCTGTTCTACCAGTTCTTTGGAGATTAAGTGCTCACaataatgagaagaagaaaaataacatacaatatatCCTGCGaataacaatatgtatttgatgAAATAATGAGCAATTAACAGCAATTTAATGTATAATCTTAatctttttcttccttcctcTTTAGTCGCTTGCTTATGCCAAGGTTTGTGGACAGAAAAGCTAGTgcagtaaatgtattttcaaagttTATGTGACAGCAAATTATACCCATTGAAATGCTGGTGGAGTATATGGATAAAACAGTATTGGTGGCGAGAACAGTAATTTCTCTGGCATTTGGATGGGCTGAAAGCATTTGCTGAAATCACACGGAcgacaaatttaaaataatatcgaaaacaaaaacaaaaccaattctTTTTTGCCATCTCATACAACGTCTCATATAATGTACTGATTTCAGTGGTGAAAACAGTGTCCTCCGTCTCTGAGACTGGTTTCTGTAGCAAAGCGAATGGCAGTGACAAAGCGGCATCTCTGGAAATAAACGGCAGCaatgtacaaacacaatatttcaTACATCACACAGCTAATACAACATCTCTTGCTGCCTTGAGGGGGTGTGTTTAAGTCAAAAACAGCCCCGACACAACAATGGGAGACATAAGCTCAgatcccccccttcccctccatAAGCAATTCTCAGAAAACGCATCAGAGCAACAAAAAGCACAACCTGTGACTTCCAATGGAGGTCACTGTAATTGCTCAGCAGCTGCCATGAAGTATAATCTGCAACTGGGCAAACAAACTGAGACTTACATTGTGTTCTACCCATTTCAAAAGCTCTCCGCAATCCCATTGACAGCCAAGCCAAAGCGCTTGGTCCACAAGggccaagaaaacaaaacagaaattaaagcaaatcCTTCTATGTGCTTGTATGTACACTTCAAACCTGCAGACGACAGGctcaaaaaaataattggtcacttttcattttctttttctcctctcctcacTGAAATGGTAGCAGCAATTTGGTTGCGTAAACATTTAGGGTCAGGCTTTCACCGTGCTGTGGGGAAAGAAGGGAAGGGAGGGGATCCACTTCCCAGTATAGGTCAGGTTTGATTCATTCCCAGCCTCTCTAATCTCTGGAAAAGCCAATCCCAATCTTGCCTGGTATGTCAGCTGACGGCGACACCAtaacaactaaaaacaacagaaagaaagTATGGTGTGCATACCAACGATGGCGTGGCACAAGCACGCAGATGGCAACATAGTCCTGCCACATTTTGCACTCGTATCGTACATATTTCCAGCAATTCCCCCTGCTGCACTGAATGCATGACGGCCACAAGGAAGGGGAGGCTACttgggaaaagaaaatgatgtttttagtggatttattattttttttctccttctttccaGTCTTCTTTCCAACGACTGTGGCTGAGTGAGAGAGCGCAGGGTGTGCAGGCCAGATGATGGACTTTATATACGAGCAATCTGCAGCGAGGGTGTGATCCCTTTCCTTTTTGAATGCAATGCCTAATTTAGCCAGCAAAGAGGGGCAGATCTCATTCTACTGGGCGTGGCTGGTCACTAGGTAAGGCTAGGTGCTGTTAGCTGGCACATGCACAGTGTTGAAGAAGGGGTTGGTGGGAAGGGTGGCGGGGATGGAGGGGTTAAGGAGTTTGGGCCTTGGGGGCGGGCCGTCCTGGAGGTTTAGTCCGTTTTGCCCAGTTTGGCGATCAGCTCGTCGCAGATCTTGGTGAGCTCCTCGATTTCTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83177 lncRNA upstream 108238 36806320 ~ 36806577 (+) True G66528
TU83173 lncRNA upstream 189686 36724894 ~ 36725129 (+) True G66524
TU83019 lncRNA upstream 840394 36004619 ~ 36074421 (+) True G66395
TU82953 lncRNA upstream 1057787 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 1097036 35813743 ~ 35817779 (+) True G66348
TU83253 lncRNA downstream 156243 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 371078 37288514 ~ 37288841 (+) True G66696
TU83368 lncRNA downstream 383812 37301248 ~ 37301598 (+) True G66700
TU83369 lncRNA downstream 386613 37304049 ~ 37309335 (+) True G66701
TU83422 lncRNA downstream 577685 37495121 ~ 37495381 (+) True G66739
AMCG00020914 mRNA upstream 45237 36851495 ~ 36869578 (+) True AMCG00020914
AMCG00020909 mRNA upstream 673595 36234933 ~ 36241220 (+) True AMCG00020909
AMCG00020910 mRNA upstream 688466 36205330 ~ 36226349 (+) True AMCG00020910
AMCG00020908 mRNA upstream 710955 36196447 ~ 36203860 (+) True AMCG00020908
AMCG00020907 mRNA upstream 719972 36187749 ~ 36194843 (+) True AMCG00020907
AMCG00020919 mRNA downstream 130206 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020925 mRNA downstream 176850 37094286 ~ 37112090 (+) True AMCG00020925
AMCG00020926 mRNA downstream 241216 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020930 mRNA downstream 266228 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020931 mRNA downstream 286552 37203988 ~ 37226869 (+) True AMCG00020931
TU83151 other upstream 658304 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1006413 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1164461 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 1749830 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 1906493 34967844 ~ 35008322 (+) True G66060
TU83857 other downstream 3403677 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 4134036 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 4680787 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 5135494 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 5508675 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile