RNA id: TU83253



Basic Information


Item Value
RNA id TU83253
length 931
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G66602
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37073679 ~ 37074634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTATTTTGGCAAGCACAATTTAGAGAAGTAACCAtgcatgtgaaaaatatatatgcaagaTCCACTTTGTTCCATTCCACAAAAGCTATTGTATGTCCAAACGACATCttgctaataataatgatgatgatgatgatgatgatgatgaataaaGTTATCCTTCCATTTAGAAGTCGATGTCCTTCTTGTTATGGGAAACATTAATCACCGTGTCAATGTTTGATTCGCCATTTTTAAGGTGTTTGATTACCTTTTTTTCTCTGACTTAAAACTCAGAGGGTAGGAAGTTACTAATTAAATGTGAGAaagttggttttgtttttcagccacCCTCCAAAACATACCTGTCCGGAACTTTATGCTTCTTGTTGTTGGTCATGCTGTTATCTGGGGGGCTGTGGTACTGCTTACACGGAACAAAAACTGCGCCGCTGCTATTTCCTTGGGGATCCGACACTTTCACACTCCCCGGGACTTCCCTGGCTGCTCTGCCGGGGTTCTGCGTTCTCCACCTCGGACTGGCGACCACTGATAGTCCCAGGCTTAGGCAGGCCTTGTGGCTTTTCAGTCTCAAAGCACGGCGATGCAGGATATCCAAGCTGTGCAGTTTCACAACATCAAGAACGATACGCCGgggttttacaaaaaacatgtaacttCAGTTACACGAACCACACCAACACGCCACAGTAAAAAACATGCCGTGGTAAACTACACTTGCTGAAAAGTGAAGGGTATAGTCCTTGAGTTGATATAGCGACAATAAAATAAGTACGAAATCATGTTGCCTTATGAACCTCCTCTGTACTGTGACACGTCGAAAGTAATTGTATCGGCTTAGAAGAAATGAAAAcgaaacatacaataaaaaaaaaaaacaaggcaGAAGGAATTCACCTCGTGTTGCCAACTCAGGCAGCAGAGCATCGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83177 lncRNA upstream 267102 36806320 ~ 36806577 (+) True G66528
TU83173 lncRNA upstream 348550 36724894 ~ 36725129 (+) True G66524
TU83019 lncRNA upstream 999258 36004619 ~ 36074421 (+) True G66395
TU82953 lncRNA upstream 1216651 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 1255900 35813743 ~ 35817779 (+) True G66348
TU83364 lncRNA downstream 213880 37288514 ~ 37288841 (+) True G66696
TU83368 lncRNA downstream 226614 37301248 ~ 37301598 (+) True G66700
TU83369 lncRNA downstream 229415 37304049 ~ 37309335 (+) True G66701
TU83422 lncRNA downstream 420487 37495121 ~ 37495381 (+) True G66739
TU83445 lncRNA downstream 496735 37571369 ~ 37575810 (+) False AMCG00020942
AMCG00020919 mRNA upstream 15643 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020914 mRNA upstream 204101 36851495 ~ 36869578 (+) True AMCG00020914
AMCG00020909 mRNA upstream 832459 36234933 ~ 36241220 (+) True AMCG00020909
AMCG00020910 mRNA upstream 847330 36205330 ~ 36226349 (+) True AMCG00020910
AMCG00020908 mRNA upstream 869819 36196447 ~ 36203860 (+) True AMCG00020908
AMCG00020925 mRNA downstream 19652 37094286 ~ 37112090 (+) True AMCG00020925
AMCG00020926 mRNA downstream 84018 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020930 mRNA downstream 109030 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020931 mRNA downstream 129354 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020942 mRNA downstream 492402 37567036 ~ 37575856 (+) True AMCG00020942
TU83200 other upstream 156243 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 817168 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1165277 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1323325 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 1908694 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 3246479 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3976838 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 4523589 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4978296 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 5351477 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile