RNA id: TU83352



Basic Information


Item Value
RNA id TU83352
length 442
lncRNA type intronic
GC content 0.45
exon number 1
gene id G66685
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37267782 ~ 37268223 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCGGACCGCGAACAGATTTGAACCCCTCGGCGGCGCGACTGCTGAGAAGGTGCTCATTATTGGAGACTCCAtagttagaaatataaagattgtgtcACCGGCAGTAGAAGTAAAATGCCTCCCGGGAGCCAGAGTCTCTGACATCAAAGCTAAATTGGACGAATTGCCAGGCGGCGAAGTTTCTACTCTGGTTATTCACGCTGGCACTAACGATATTAGACATAGAcaatcagagattttaaaaagaaattttACAGTGCTATGCAAAACAGCGAAAAACGATGTCAGAATATAATTGTCTCTGGGCCACtaccaacattacacagaggggatgaggccttcagcaggctgtcctctctaAATAGCTGGTTGACAAGCTGGTGTGCATCAAATCATTTCGTTTTTGTGAacaattgggattgtttttgggaaaggcctggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83275 lncRNA downstream 247986 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 397627 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 416146 36851070 ~ 36851636 (-) True G66535
TU83176 lncRNA downstream 520039 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 985255 36278150 ~ 36282527 (-) True AMCG00020911
TU83423 lncRNA upstream 226900 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 468540 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 631244 37899467 ~ 37899878 (-) True G66817
TU83550 lncRNA upstream 912814 38181037 ~ 38181274 (-) True G66851
TU83575 lncRNA upstream 1009771 38277994 ~ 38278539 (-) True G66872
AMCG00020929 mRNA downstream 92542 37173840 ~ 37175240 (-) True AMCG00020929
AMCG00020927 mRNA downstream 112495 37148494 ~ 37155287 (-) True AMCG00020927
AMCG00020928 mRNA downstream 144923 37115543 ~ 37122859 (-) True AMCG00020928
AMCG00020920 mRNA downstream 193205 37069515 ~ 37074577 (-) True AMCG00020920
AMCG00020922 mRNA downstream 199977 37061595 ~ 37067805 (-) True AMCG00020922
AMCG00020933 mRNA upstream 35742 37303965 ~ 37323700 (-) True AMCG00020933
AMCG00020935 mRNA upstream 56991 37325214 ~ 37337254 (-) True AMCG00020935
AMCG00020934 mRNA upstream 69688 37337911 ~ 37356170 (-) True AMCG00020934
AMCG00020936 mRNA upstream 130076 37398299 ~ 37454868 (-) True AMCG00020936
AMCG00020937 mRNA upstream 256482 37524705 ~ 37527768 (-) True AMCG00020937
TU83289 other downstream 199990 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 221843 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1281086 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1447952 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1583227 35679432 ~ 35684555 (-) True G66279
TU83462 other upstream 363577 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 1781993 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4332178 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile