RNA id: TU83422



Basic Information


Item Value
RNA id TU83422
length 261
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G66739
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37495121 ~ 37495381 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatcagtgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggacacttttgataggtactgagcactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcgcaatttggcccttgtcaaagtcgctcagatccttacgctgcccatttttcct

Function


GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83369 lncRNA upstream 185786 37304049 ~ 37309335 (+) True G66701
TU83368 lncRNA upstream 193523 37301248 ~ 37301598 (+) True G66700
TU83364 lncRNA upstream 206280 37288514 ~ 37288841 (+) True G66696
TU83253 lncRNA upstream 420487 37073679 ~ 37074634 (+) True G66602
TU83177 lncRNA upstream 688544 36806320 ~ 36806577 (+) True G66528
TU83445 lncRNA downstream 75988 37571369 ~ 37575810 (+) False AMCG00020942
TU83465 lncRNA downstream 155048 37650429 ~ 37650698 (+) True G66780
TU83471 lncRNA downstream 242351 37737732 ~ 37739188 (+) True G66784
TU83489 lncRNA downstream 341721 37837102 ~ 37862332 (+) True G66801
TU83521 lncRNA downstream 479422 37974803 ~ 38065665 (+) True G66826
AMCG00020931 mRNA upstream 268252 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020930 mRNA upstream 309193 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020926 mRNA upstream 329819 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020925 mRNA upstream 383031 37094286 ~ 37112090 (+) True AMCG00020925
AMCG00020919 mRNA upstream 437085 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020942 mRNA downstream 71655 37567036 ~ 37575856 (+) True AMCG00020942
AMCG00020941 mRNA downstream 133943 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020945 mRNA downstream 174581 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020944 mRNA downstream 217618 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020946 mRNA downstream 410890 37906271 ~ 37922454 (+) True AMCG00020946
TU83200 other upstream 577685 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1238610 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1586719 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1744767 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2330136 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2825732 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3556091 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 4102842 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4557549 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4930730 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile