RNA id: TU83465



Basic Information


Item Value
RNA id TU83465
length 270
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G66780
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37650429 ~ 37650698 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTGAAAcgtgtgcattttgtttcacctgtaacttgccctggttaaaggcgtctgataagtaaattataaataatacggcaaataGTATTGTTTGCacttacaaatctgtagtaagagtaataagttaagggagtcatgcgttgccgtttaaaatacatatatactagcacaaatgatgactataataatatcaatacatatttgctatttagtattattgttgcgcatggaaacgtattcttatgaggacgtgcttgtctgaatataat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83445 lncRNA upstream 74619 37571369 ~ 37575810 (+) False AMCG00020942
TU83422 lncRNA upstream 155048 37495121 ~ 37495381 (+) True G66739
TU83369 lncRNA upstream 341094 37304049 ~ 37309335 (+) True G66701
TU83368 lncRNA upstream 348831 37301248 ~ 37301598 (+) True G66700
TU83364 lncRNA upstream 361588 37288514 ~ 37288841 (+) True G66696
TU83471 lncRNA downstream 87034 37737732 ~ 37739188 (+) True G66784
TU83489 lncRNA downstream 186404 37837102 ~ 37862332 (+) True G66801
TU83521 lncRNA downstream 324105 37974803 ~ 38065665 (+) True G66826
TU83538 lncRNA downstream 471081 38121779 ~ 38123587 (+) False AMCG00020954
TU83564 lncRNA downstream 589992 38240690 ~ 38244475 (+) True G66861
AMCG00020941 mRNA upstream 20335 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020942 mRNA upstream 74573 37567036 ~ 37575856 (+) True AMCG00020942
AMCG00020931 mRNA upstream 423560 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020930 mRNA upstream 464501 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020926 mRNA upstream 485127 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020945 mRNA downstream 19264 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020944 mRNA downstream 62301 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020946 mRNA downstream 255573 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020951 mRNA downstream 380030 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020950 mRNA downstream 455314 38106012 ~ 38111899 (+) True AMCG00020950
TU83200 other upstream 732993 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1393918 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1742027 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1900075 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2485444 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2670415 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3400774 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3947525 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4402232 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4775413 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile