RNA id: TU83471


Basic Information

Item Value
RNA id TU83471
length 1457
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G66784
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37737732 ~ 37739188 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAACAAAAAACTTCTAATTTTAAGAAGATGATAGTCCCGGGTCAGATttgaacagaaaacataaaattagATGTGCAGGAAGCAGAAACTAGATAAGAACTAAAGTGCAAACACCTCTTTATGTAATCAAGATTTTGTTACATCTATTTTAAAGAGGAGACTGTAAGGAAGGGGGAGTGGAGGGGTGCTATGGAAAAATACTCTTTTTAGGACATTTTAATCTCTTATCTCTGCTAGCCTGGATCAGATAACAATGGCTTAGTTTTGCCCAGTTATGGTATAGTGCAACTTTTATAGGCAAAGTAGTCAAACCCTgctattttctttcattttaactttGTGCACAATAATGCTTTTACTAACCAGTTTCACAGAATTGAAAAACCTGTAGCTATGCAGGATCACAGTTGGTGGCTCTAAGATGCCTCTACCTACCTCACACTTCACAACAGAATGCACACTTGCTTACAATAAACATAGGAGTCTTCATACAATGATTTACACCCTGCAGACCAACCTTCAACCTGAGAGTAAGGGCCCTGTACAGTTATACCATGGTCAATATGCACTGTGCCAGATTATCTGTTGATATCTCCAGGGTGTTGAGCAGAGACCAAAATACCACATCAGTGGAGCTCAAAAGCCTAATCTCCTGAGACTGGCATTGGAGTTCTAAGTGACCTCTTCCATAATGCAGATTGTAGGTTCAtactattattttgtttaagaaatgcCAGTATCCAAAGTAACTTACATAGTTTAACAAATATCAACATGCCTATACACAACATCACAAGGGAAGCAATATTactatacatacaaacaaaggTATAATGAGAAGGTGAGAATGGTCTACAGGTGTAAATAATCTATATATTTCtactaatatttattaatttgaaccAATAATACAATAAGACTTTTATTGTTAGGGAATTAATGCCAATCATTTGATCTCCCATTGCTTTTAATCTTTATGGTtcagagaaaattaaacaaaacagaacaaatagaTCAGATGGCTTAGTTTCTCAAACTGTACAGTCTGTATCATAAGAGATCTACAGAACAGAGTGTATGCACACAATCTACTTCATCATAACCCACCAAGACAGTGCTTTATGAAACAGTGAAAAAGTCACGGGTAGGCTCCTATTTAACCTAATGGTATTCTTCAAataatggaagaaaaaataggggaaagaaaacaatcacttGTCATAAAGCAGCTTGCAGATTTCAGGGACTGGACAGTGGTTCTTTGTGTTTCTCGTGAGTGGTGGGTTGAGctgtatttcagagaaaagCACAGTGCTGTTACAGGCTGCCTGGCCCATGGGAAGAGCTGTGTAAGCCAAGCTGAACTTGTTTCTGTACTATATTCACACATATAGTACGCCCCTCACTTTCCCTTTGTAACCATTTGCTTTATATAAAAAGACTGTAAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83465 lncRNA upstream 87034 37650429 ~ 37650698 (+) True G66780
TU83445 lncRNA upstream 161922 37571369 ~ 37575810 (+) False AMCG00020942
TU83422 lncRNA upstream 242351 37495121 ~ 37495381 (+) True G66739
TU83369 lncRNA upstream 428397 37304049 ~ 37309335 (+) True G66701
TU83368 lncRNA upstream 436134 37301248 ~ 37301598 (+) True G66700
TU83489 lncRNA downstream 97914 37837102 ~ 37862332 (+) True G66801
TU83521 lncRNA downstream 235615 37974803 ~ 38065665 (+) True G66826
TU83538 lncRNA downstream 382591 38121779 ~ 38123587 (+) False AMCG00020954
TU83564 lncRNA downstream 501502 38240690 ~ 38244475 (+) True G66861
TU83568 lncRNA downstream 536802 38275990 ~ 38276294 (+) True G66865
AMCG00020944 mRNA upstream 20652 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020945 mRNA upstream 52236 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020941 mRNA upstream 107638 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020942 mRNA upstream 161876 37567036 ~ 37575856 (+) True AMCG00020942
AMCG00020931 mRNA upstream 510863 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020946 mRNA downstream 167083 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020951 mRNA downstream 291540 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020950 mRNA downstream 366824 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020954 mRNA downstream 377874 38117062 ~ 38137073 (+) True AMCG00020954
AMCG00020955 mRNA downstream 487058 38226246 ~ 38228104 (+) True AMCG00020955
TU83200 other upstream 820296 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1481221 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1829330 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1987378 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2572747 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2581925 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3312284 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3859035 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4313742 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4686923 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile