RNA id: TU83474


Basic Information

Item Value
RNA id TU83474
length 2435
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G66786
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37736763 ~ 37739197 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCAAGGTTTACTTTTACAGTCTTTTTATATAAAGCAAATGGTTACAAAGGGAAAGTGAGGGGCGTACTATATGTGTGAATATAGTACAGAAACAAGTTCAGCTTGGCTTACACAGCTCTTCCCATGGGCCAGGCAGCCTGTAACAGCACTGTGcttttctctgaaatacagCTCAACCCACCACTCACGAGAAACACAAAGAACCACTGTCCAGTCCCTGAAATCTGCAAGCTGCTTTATGACaagtgattgttttctttcccctattttttcttccattatTTGAAGAATACCATTAGGTTAAATAGGAGCCTACCCGTGACTTTTTCACTGTTTCATAAAGCACTGTCTTGGTGGGTTATGATGAAGTAGATTGTGTGCATACACTCTGTTCTGTAGATCTCTTATGATACAGACTGTACAGTTTGAGAAACTAAGCCATCTGAtctatttgttctgttttgtttaattttctctgaACCATAAAGATTAAAAGCAATGGGAGATCAAATGATTGGCATTAATTCCCTAACAATAAAAGTCTTATTGTATTATTggttcaaattaataaatattagtaGAAATATATAGATTATTTACACCTGTAGACCATTCTCACCTTCTCATTATAcctttgtttgtatgtatagtAATATTGCTTCCCTTGTGATGTTGTGTATAGGCATGTTGATATTTGTTAAACTATGTAAGTTACTTTGGATACTGgcatttcttaaacaaaataatagtaTGAACCTACAATCTGCATTATGGAAGAGGTCACTTAGAACTCCAATGCCAGTCTCAGGAGATTAGGCTTTTGAGCTCCACTGATGTGGTATTTTGGTCTCTGCTCAACACCCTGGAGATATCAACAGATAATCTGGCACAGTGCATATTGACCATGGTATAACTGTACAGGGCCCTTACTCTCAGGTTGAAGGTTGGTCTGCAGGGTGTAAATCATTGTATGAAGACTCCTATGTTTATTGTAAGCAAGTGTGCATTCTGTTGTGAAGTGTGAGGTAGGTAGAGGCATCTTAGAGCCACCAACTGTGATCCTGCATAGCTACAGGTTTTTCAATTCTGTGAAACTGGTTAGTAAAAGCATTATTGTGCACaaagttaaaatgaaagaaaatagcAGGGTTTGACTACTTTGCCTATAAAAGTTGCACTATACCATAACTGGGCAAAACTAAGCCATTGTTATCTGATCCAGGCTAGCAGAGATAAGAGATTAAAATGTCCTAAAAAGAGTATTTTTCCATAGCACCCCTCCACTCCCCCTTCCTTACAGTCTCCTCTTTAAAATAGATGTAACAAAATCTTGATTACATAAAGAGGTGTTTGCACTTTAGTTCTTATCTAGTTTCTGCTTCCTGCACATctaattttatgttttctgttcaaATCTGACCCGGGACTATCATCTTCTTAAAATTAGAAGTTTTTTGTTGTCATGTTATACCTGCTGACTATTGGTAAAGCATTATGAGTTTTCATATAAAAGAGGATTAGAAAGCTGCATTTGGTTGAATAATCACTTGTATAGCAAGAACAAAACACCACTTACTACTGAATATACATGAACTtagaaatcatttaaataaagtaagtcattataatgtatgtgttaCATGGActgtctgttttatattttgtgggGCACATGCAAGAAGAACAtctgatttatttctgtgtgatCCTTcttagaaatatgtattatttattattggatCTATTTGTTGTAAACCTGCATTGTTCCACACATAGATCACACATTTTATGAACTCCAATGCATATGTGTCCCCATTGATAATGCTGCTTTAGTCATTGGTTTTCTATCCCTAAAAGTTGCAGAAATGTTCAATTTTCTTTGAAATCGGGGTGAAAATCCTGTTTTCACACCAGGTTAGGACAGGGTCAGACAAATTGAGGGCACATTATAAGATGGTGCTAGAGCGAGAGGGATTTCTCTCTTTGTAGGGATTGTAGGCTGTGTAAACCAAGCTTTCGTCACCATCTCCCAGAcagctgtactgtacatttctatcttgttttttgaaatcaTGACATGAGAAAGTGATGAAAAACAATCACAAGGACAACAAAAAGACATGTGTTATTAAACAAGCACAGCttgatacaataataaaatgccaTGAGATACCACTGGCTTTACAATAAGTTATGACACTTAAgacaatgaaaatgacaaaccCCTTCCATATTGAACCCAACAGACTGGAATGCTTTCCATTAAACACCTGGTAAGCGagcagtaaaatatatacaactatGAACCCAACATATTGGATCATACCAACACCTGACTATTATTATGTTTCTGTAATTGATGAGTTAACATGGGGTGCTTCCAAACACATAGttatttgaaacacaaaataacagaatacTGCCACGGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83423 lncRNA downstream 241393 37495123 ~ 37495370 (-) True G66740
TU83352 lncRNA downstream 468540 37267782 ~ 37268223 (-) True G66685
TU83275 lncRNA downstream 716967 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 866608 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 885127 36851070 ~ 36851636 (-) True G66535
TU83511 lncRNA upstream 160270 37899467 ~ 37899878 (-) True G66817
TU83550 lncRNA upstream 441840 38181037 ~ 38181274 (-) True G66851
TU83575 lncRNA upstream 538797 38277994 ~ 38278539 (-) True G66872
TU83634 lncRNA upstream 955795 38694992 ~ 38697487 (-) True G66920
TU83640 lncRNA upstream 968075 38707272 ~ 38732240 (-) True G66926
AMCG00020943 mRNA downstream 104271 37631777 ~ 37632492 (-) False AMCG00020943
AMCG00020940 mRNA downstream 170643 37556580 ~ 37566120 (-) True AMCG00020940
AMCG00020938 mRNA downstream 186858 37545624 ~ 37549905 (-) True AMCG00020938
AMCG00020939 mRNA downstream 197364 37534755 ~ 37539399 (-) True AMCG00020939
AMCG00020937 mRNA downstream 208995 37524705 ~ 37527768 (-) True AMCG00020937
AMCG00020948 mRNA upstream 32954 37772151 ~ 37814897 (-) True AMCG00020948
AMCG00020947 mRNA upstream 76697 37815894 ~ 37821863 (-) True AMCG00020947
AMCG00020949 mRNA upstream 103703 37842900 ~ 37892340 (-) True AMCG00020949
AMCG00020953 mRNA upstream 228975 37968172 ~ 38030972 (-) True AMCG00020953
AMCG00020952 mRNA upstream 355905 38095102 ~ 38095590 (-) True AMCG00020952
TU83462 other downstream 104187 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 668971 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 690824 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1750067 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1916933 35813969 ~ 35819830 (-) True AMCG00020887
TU83728 other upstream 1311019 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 3861204 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile