RNA id: TU83511


Basic Information

Item Value
RNA id TU83511
length 412
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G66817
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37899467 ~ 37899878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTGAGTCTCCTATTTCAACTTTCAACAATTATGCAAGGCACAAATGCACCGGATGAAAGAGTGGACAACTCTTTACAAAAGTATAATAGCAATacttacttaactgtattcttgcactttgtattgcacttatgttgtaagtcgccctgggtaagggcatctgccaagaaataataataataataatacaatatgtcTTCGCTGTTTCGTTATTCTAATTACGTAGATAttaaagtaattgtattttgttcattaGTTGCCTAAACAATTTCCCTAATTTGCAAATGACTACGAAATCAGTAATATcgcaacacaatgcattctCTATtacatgtctttaaaataaatgaaattaaattcttCAAATATCACATATTCATGATATCATAAGACTGCGATGTTGTTTGCcc

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83474 lncRNA downstream 160270 37736763 ~ 37739197 (-) True G66786
TU83423 lncRNA downstream 404097 37495123 ~ 37495370 (-) True G66740
TU83352 lncRNA downstream 631244 37267782 ~ 37268223 (-) True G66685
TU83275 lncRNA downstream 879671 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 1029312 36869417 ~ 36870155 (-) True G66536
TU83550 lncRNA upstream 281159 38181037 ~ 38181274 (-) True G66851
TU83575 lncRNA upstream 378116 38277994 ~ 38278539 (-) True G66872
TU83634 lncRNA upstream 795114 38694992 ~ 38697487 (-) True G66920
TU83640 lncRNA upstream 807394 38707272 ~ 38732240 (-) True G66926
TU83642 lncRNA upstream 824413 38724291 ~ 38772808 (-) False G66927
AMCG00020949 mRNA downstream 7127 37842900 ~ 37892340 (-) True AMCG00020949
AMCG00020947 mRNA downstream 77604 37815894 ~ 37821863 (-) True AMCG00020947
AMCG00020948 mRNA downstream 84570 37772151 ~ 37814897 (-) True AMCG00020948
AMCG00020943 mRNA downstream 266975 37631777 ~ 37632492 (-) False AMCG00020943
AMCG00020940 mRNA downstream 333347 37556580 ~ 37566120 (-) True AMCG00020940
AMCG00020953 mRNA upstream 68294 37968172 ~ 38030972 (-) True AMCG00020953
AMCG00020952 mRNA upstream 195224 38095102 ~ 38095590 (-) True AMCG00020952
AMCG00020958 mRNA upstream 332788 38232666 ~ 38238994 (-) True AMCG00020958
AMCG00020957 mRNA upstream 341868 38241746 ~ 38260001 (-) True AMCG00020957
AMCG00020959 mRNA upstream 378757 38278635 ~ 38300419 (-) True AMCG00020959
TU83462 other downstream 266891 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 831675 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 853528 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1912771 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 2079637 35813969 ~ 35819830 (-) True AMCG00020887
TU83728 other upstream 1150338 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 3700523 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile