RNA id: TU83564


Basic Information

Item Value
RNA id TU83564
length 3766
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G66861
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38240690 ~ 38244475 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGAATATAAAAGGTTTTTATTCAGATTTACAAGTAAGAATTTAAGGATTTCATAATATACATTAGAAATTCGGTGCACAGCAACATTGTATACAACTCCATTCTCAAGAGAGGAAGCAATTTCAGAGGAAGAtcttaaacatttcaaaagcaaaacaaaaaataaaaatcagcacctctcccaatgcattataTCAGCCACTGAAAGAACCAAGTAAATAACCCACTATACAGTTCAAAGCTATTAAAAGCATTTGGTTAAATACTACAATCCTTCATAAGGAGAAGTGAAATCAAATGGAGGTGCTATATTGAATATTTGAACAAACATCAGACCCCAGATGTAAACATTAAGCCTTTTCaaacttttatattatttcaaggtagaaattatttccattgtgcaatatttaatacaaaCCCCATCTGGGTCGAAGACAGCGATTCTCAACCTAGAACCGTTTTCATGCAAGACTTACAGATCAACAGTCCTGCGGTCCATCATCCACAAACTCCACTGATACATGGAGTTTAGTGGGATTCTCTGAAGTTGCAGTCCAGTTGTATCTTAAGATCAGCACTACGATTTGACCAGAGTGGTATGCTTTACATTTAGGATAACCAACATATTTGATGCCCATATTTGAGCATCCAAGTTAGGAAAGAGGTCCCCCAAACAGAAAGGTTTAACAGATCCTAATGTAAGGAGCCAAGACCTATGCTGTTCGCTTTATGGTCATCTTCTCAAATCCTCAATACTGCAGTACCTTGCATCAACTTCCTTagcatgaaaatgtattcattcattcaccaTCAAGAAAAAGGTCATAAGTCTGCATTTATTCCTGTAACAATCATAGTATCATCAGCAACAGTGCAGATTGTCATCACAGGACAGCCCGACAGAATTCAAAAACACACCAGAACACAAAAGCCTTTTCCCCAATATTTTGTTAACGCATCATATTGTGTACAGGATCTCCACAGTATTTTTTCTGGAATGGTCaccttgccccccccccaccccacccaacgaaaataaaaaaaaattcagaagGCATTTCTTCCAAAATGTGTATCCAAGGCACTGTATAAAAGGTAGCCACTTTTTATTGTAGGATTTGAAGATCTACAAAATAGAGTATTATTCAAAATCTTCTGCTATTTGTAATATACACATTCTATTGAagcaacatttaacaaaaaaggaaaacccaGTTTACCAAATAGAAGTTCGCTTTCAAGCAAGTACAGCACTAATAATGACTTACCCtcaaatgttaatgtaataatgaTGTATAAACCCTATTATTCACAATCCTCCTCCACAATGTttgcatgctttaaaatgcaagatgctttttgcagttttaagatttaataatttctaagttactgaaaaaaaagttataatgcttaaaaatagaatagtttttcacaaaaccaaaaaggtAACAatgacccaaaaaaaaaaaaaaggtacatttttaattccacataatgaactgtttaaatacatttcagcagcCCATTTCACGTGGTCTCAAAGCAGGCAAATAGGGTATGATTTCAAATAACATGATTTCAACTCTGAATATACTGGTGTAAGTGAGGCTCGGCtttcacagtgttttatttaggcTGTGTATTCACCGTAGGCACACGAGGTGAGGACCCATAAGATGCTGGGATTTTTGGCTAGCATGCGATTCTCTGAATTTGCAGCTGGTGAGAAGTCTGGTACAAGTTTTGTCAAATCCCAGTGCTTTCATTTAATAGGCCAAGCAAGATGGTCTTAAATCTACCTCAGGCTTGTTATGTATCCTCTCTCCCATTTTAGGGCACACTATCGCATCAGAATATCTGCCAATCTGCCAACACTGCCAAGGATTTGGCTGGACCGAATGCGGACCCGTTAGCAGATTTTAAAACTTGATTCCAAAACTAATGCAATTCCCATTTTTGGCCTTTAAAAAGACGCTTGTTGGGGAAGGTAGTGAAGTTCAATTCTGAAGAATTCATTCTTAGTCAGCCCAGTCACCCAGACAAAGGAAGTTACAGATAAAGGCTGGTATGGCCTCCCACATGTACAACCCCCACCTTTTTTCCACAACAAGCAAGCTTTTCAATAAGGGaggcatataaataaaaaataaataaaaaaacaggacagaaaaacTTGCATTTCCACCTCAACACAAAGCTGGCAATGTGGGGGGTGAGACCTTAAATCTGTTTAATCATTACCTAGGCTTTGACAGgagattttaaaagatgtacTGGGATCTGGTATGGCTTAGAGGTATCCTAGCGTTTATTTTTGCATGTGCCACTTACACAAGTTACAACCCCTCTTTAACTTTAAACCAAGCCATTTCGGTGGACTTCATCACAGTGCCTTTCAAAGCAAGTCTGATTCACAGCTTCGTACAGACAATACTTCAAAAGCTTATTAATTACCAACAGAAgtacatgtataaaaaaaagtgaactaGAGacctataaaaatatattcagtcaCCACAACCAAAATCAAATGGTGACATTCtagaatgcatttaaataaaatacttgttttaatCCGATTGATCAATAAACATTAATTGATAAAACACGTGTAACCAAcatttgtttatacatataaaagtTAGATACTATAATTGTGCCTGGTTTTAGTACATGGGTATAAAAGTAAGGCATTGAGAAAGGTAAGTTTAGGACACTTGGCTCAAGTgttcaagtgtgtgtgtgtgtctgatagTGCCCCAGTATCTGAAACCAGGCCGATTTAATTTCCACCATGATACAAGCCTACTAGCATAACTTTAAGGCTTCTgatattcaaaaacaacaagCTGAACTGGAGTAACAATACATACTTAGTTTAACATCACCCCCAAATATATTAAATCCATGTACATTCTACGAACCCATATATTTCTTCAAGACTATTTAAACATGATTTCCTGAAGGGAATTATAGCCACACAAATGACAATTCTGGAGAAAGAGGATCTAAAATTTGATTGAAGAAATGATCTTGAATAAGAATACATATACCAATAACTTGTTCTTCCATTTCTGAAAGAGTATGTTGTTTCAAAACTATATTGATTTGGGTTTGTATTACATAGTCCCACATAGGGATCTTCTCACACAATTCAATCTAAAAGGAAGACTCATCTGggtttaaaatctgaaaaaagcaGAGTATGACTTACTGTACACCATTGTGTGCAGAGTGTGATTATAATAGTCTTATagtgacaaaaaaaagttaacagTACTGCAAATTATAtggtattaaatcaagaaaaagtTTTCCCCAAAGTATTCTATATTGATGTACTAATGCTGCATCTCTACACATGATTAAAAAAGGTTTGAAGAAAAAAGTTTTACTGGGTGCAGGAACCATCTGTATCAGATAATCTGATGTCTCGTTGAAGATAAAGTGCATGTGATaaagagggaggagggagagggtaTGGAGGAAAAGGAGTGATTTAGGTGGGGGGAGCCCAAGCGTGTGCCAAGTGGCTCCTGCCTCCGATGTTTCACATGGCCTTCTTGGTCTTGCTCATAGCCAGCAGGATACTGGGCTTCTCATCCATGACGTGCACCAGCAGGTTGTCGATGTAGTCCTCCAGCTCCAGGATCTTGCTGTCCTTCTTGCCCAGCTCCTCCTGCTGCTTCACCACCAATgagaccagctcctcctgggTGAGCTGGGAGTACGGGGAGTTGCCGGAGGAGTTGCCCACC

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83538 lncRNA upstream 117103 38121779 ~ 38123587 (+) False AMCG00020954
TU83521 lncRNA upstream 175025 37974803 ~ 38065665 (+) True G66826
TU83489 lncRNA upstream 378358 37837102 ~ 37862332 (+) True G66801
TU83471 lncRNA upstream 501502 37737732 ~ 37739188 (+) True G66784
TU83465 lncRNA upstream 589992 37650429 ~ 37650698 (+) True G66780
TU83568 lncRNA downstream 31515 38275990 ~ 38276294 (+) True G66865
TU83593 lncRNA downstream 180237 38424712 ~ 38425252 (+) True G66887
TU83691 lncRNA downstream 766104 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 804946 39049421 ~ 39049631 (+) True G66995
TU83754 lncRNA downstream 1060822 39305297 ~ 39305587 (+) True G67027
AMCG00020955 mRNA upstream 12586 38226246 ~ 38228104 (+) True AMCG00020955
AMCG00020954 mRNA upstream 103617 38117062 ~ 38137073 (+) True AMCG00020954
AMCG00020950 mRNA upstream 128791 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020951 mRNA upstream 208724 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020946 mRNA upstream 318236 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020956 mRNA downstream 15043 38259518 ~ 38275155 (+) True AMCG00020956
AMCG00020962 mRNA downstream 247237 38491712 ~ 38516342 (+) True AMCG00020962
AMCG00020963 mRNA downstream 443688 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020964 mRNA downstream 512260 38756735 ~ 38772815 (+) True AMCG00020964
AMCG00020965 mRNA downstream 540404 38784879 ~ 38812254 (+) True AMCG00020965
TU83200 other upstream 1323254 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1984179 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2332288 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 2490336 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3075705 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2076638 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2806997 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3353748 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3808455 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4181636 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile