RNA id: TU83568


Basic Information

Item Value
RNA id TU83568
length 305
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G66865
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38275990 ~ 38276294 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGTACGTTCACCACTTCCCATTCAGTCTAGTCGGAGGTTGAAACCGCAGTCTGATCTGGTCtctgactgattgattggttggttgaccaatcaaatgaaaaatatccaGCCGGCAGTACAGAGTCCAGTCACTGTCATCGATTCGTCGCCTGATTAAACCCAATCGATAGTTTGTACCGATACTAAATTCTGGAAAACAGAGCGTGCTAATTTAGCTTATCAACGCATCATATACATGATTTAAAACTCTGTAGTCCCTTTCATTggctaatacatttatatttctatgtTTGCAGTCATTTG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83564 lncRNA upstream 31515 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 152403 38121779 ~ 38123587 (+) False AMCG00020954
TU83521 lncRNA upstream 210325 37974803 ~ 38065665 (+) True G66826
TU83489 lncRNA upstream 413658 37837102 ~ 37862332 (+) True G66801
TU83471 lncRNA upstream 536802 37737732 ~ 37739188 (+) True G66784
TU83593 lncRNA downstream 148418 38424712 ~ 38425252 (+) True G66887
TU83691 lncRNA downstream 734285 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 773127 39049421 ~ 39049631 (+) True G66995
TU83754 lncRNA downstream 1029003 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 1472863 39749157 ~ 39749361 (+) True G67048
AMCG00020956 mRNA upstream 835 38259518 ~ 38275155 (+) True AMCG00020956
AMCG00020955 mRNA upstream 47886 38226246 ~ 38228104 (+) True AMCG00020955
AMCG00020954 mRNA upstream 138917 38117062 ~ 38137073 (+) True AMCG00020954
AMCG00020950 mRNA upstream 164091 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020951 mRNA upstream 244024 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020962 mRNA downstream 215418 38491712 ~ 38516342 (+) True AMCG00020962
AMCG00020963 mRNA downstream 411869 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020964 mRNA downstream 480441 38756735 ~ 38772815 (+) True AMCG00020964
AMCG00020965 mRNA downstream 508585 38784879 ~ 38812254 (+) True AMCG00020965
AMCG00020967 mRNA downstream 604302 38880596 ~ 38885107 (+) True AMCG00020967
TU83200 other upstream 1358554 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2019479 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2367588 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 2525636 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3111005 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2044819 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2775178 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3321929 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3776636 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4149817 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile