RNA id: TU83575


Basic Information

Item Value
RNA id TU83575
length 546
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G66872
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38277994 ~ 38278539 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAGTCCTGTGGTGCTTCTAGgctctttttttttaccagtgACCTCtcagttgcttaattgaactaattatatacttaattatgcatttgttttttttaatttcaacagcTTGTTAACACTTAACACttatatcaattaaaatctCAAACTTTTTAAgatcttaattaaaaattaaaatatctaattAAACAGATGTATACTTCAAAACAAAAGCCCCTatagaatataaaaaaacactgctataggattttcttttttcttctaatttccatttctgtgtCCATTCTTCATGTTTTCATCAGCTGATTAGGTAATGGTCAAAAACTGCAGTCATTCACCCTGTCGTACTTCTCTTATCCACAGTTTGTGACAGCTAGCTCGCTGTTGTGCTTGTTTTCTTTCGCAGCTCTCATCTCTAATTACTTCAGGATCTAggtgcatatttatatttttacctGATGCCAAttcattatgtattataaaaaaaaaaaaacgaaaaatgttgttgttttataatatattttttagaaccCAGACAGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83550 lncRNA downstream 96720 38181037 ~ 38181274 (-) True G66851
TU83511 lncRNA downstream 378116 37899467 ~ 37899878 (-) True G66817
TU83474 lncRNA downstream 538797 37736763 ~ 37739197 (-) True G66786
TU83423 lncRNA downstream 782624 37495123 ~ 37495370 (-) True G66740
TU83352 lncRNA downstream 1009771 37267782 ~ 37268223 (-) True G66685
TU83634 lncRNA upstream 416453 38694992 ~ 38697487 (-) True G66920
TU83640 lncRNA upstream 428733 38707272 ~ 38732240 (-) True G66926
TU83642 lncRNA upstream 445752 38724291 ~ 38772808 (-) False G66927
TU83641 lncRNA upstream 493081 38771620 ~ 38772808 (-) True G66927
TU83715 lncRNA upstream 758621 39037160 ~ 39038645 (-) True G66994
AMCG00020957 mRNA downstream 17993 38241746 ~ 38260001 (-) True AMCG00020957
AMCG00020958 mRNA downstream 39000 38232666 ~ 38238994 (-) True AMCG00020958
AMCG00020952 mRNA downstream 182404 38095102 ~ 38095590 (-) True AMCG00020952
AMCG00020953 mRNA downstream 247022 37968172 ~ 38030972 (-) True AMCG00020953
AMCG00020949 mRNA downstream 385654 37842900 ~ 37892340 (-) True AMCG00020949
AMCG00020959 mRNA upstream 96 38278635 ~ 38300419 (-) True AMCG00020959
AMCG00020961 mRNA upstream 87588 38366127 ~ 38410862 (-) True AMCG00020961
AMCG00020960 mRNA upstream 149341 38427880 ~ 38458638 (-) True AMCG00020960
AMCG00020971 mRNA upstream 726891 39005430 ~ 39009794 (-) True AMCG00020971
AMCG00020970 mRNA upstream 769165 39047704 ~ 39080843 (-) True AMCG00020970
TU83462 other downstream 645418 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 1210202 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 1232055 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 2291298 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 2458164 35813969 ~ 35819830 (-) True AMCG00020887
TU83728 other upstream 771677 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 3321862 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile