RNA id: TU83593



Basic Information


Item Value
RNA id TU83593
length 541
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G66887
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38424712 ~ 38425252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atccatatttggtgtgaccaccctttgccttcaaaacagcatcaattcttctaggtacacttgcacaaagtcagggattttgtaggcatatagtctgGTGTATGATtgaacaattataccaaacaggtgctaatgatcatcaattcaatatgtaggttgaaatacaatcattaactgacacagaaacagctgtgtaggaggaataaaactaggtgaggaacagccaaactcagctaacaaggtttactgtcaaaagtcatacaccatggcaagactgagcacagcaacaagacacagggtagttatactgcatcagcaaggtctctgcCAGGCATAAATTTCAAGGCAGAAAGGGGTTTCCacatgtgctgtccaagctcttttgaagaagcacaaagaaacgggtaACATTGAGGACCATAGgtacagtggtcggccaaggaaacttgaTGAAAGACACATCCTGCTTACTGCCCTccgcaattggaagatgtccagcagtgtcaTCAgttcagaattggcagaaaacagtgggacccNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83568 lncRNA upstream 148418 38275990 ~ 38276294 (+) True G66865
TU83564 lncRNA upstream 180237 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 301125 38121779 ~ 38123587 (+) False AMCG00020954
TU83521 lncRNA upstream 359047 37974803 ~ 38065665 (+) True G66826
TU83489 lncRNA upstream 562380 37837102 ~ 37862332 (+) True G66801
TU83691 lncRNA downstream 585327 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 624169 39049421 ~ 39049631 (+) True G66995
TU83754 lncRNA downstream 880045 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 1323905 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 2138950 40564202 ~ 40570215 (+) True AMCG00020993
AMCG00020956 mRNA upstream 149557 38259518 ~ 38275155 (+) True AMCG00020956
AMCG00020955 mRNA upstream 196608 38226246 ~ 38228104 (+) True AMCG00020955
AMCG00020954 mRNA upstream 287639 38117062 ~ 38137073 (+) True AMCG00020954
AMCG00020950 mRNA upstream 312813 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020951 mRNA upstream 392746 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020962 mRNA downstream 66460 38491712 ~ 38516342 (+) True AMCG00020962
AMCG00020963 mRNA downstream 262911 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020964 mRNA downstream 331483 38756735 ~ 38772815 (+) True AMCG00020964
AMCG00020965 mRNA downstream 359627 38784879 ~ 38812254 (+) True AMCG00020965
AMCG00020967 mRNA downstream 455344 38880596 ~ 38885107 (+) True AMCG00020967
TU83200 other upstream 1507276 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2168201 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2516310 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 2674358 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3259727 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1895861 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2626220 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3172971 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3627678 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4000859 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile