RNA id: TU83634


Basic Information

Item Value
RNA id TU83634
length 2496
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G66920
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38694992 ~ 38697487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaaatattttttgttttatttttttatataaacaccCTCTCCATCTTCGTCtccatatttttgtatttacagtatttataataatcttcaaaataaagcattaaaaagaaaatggcataATTTGTGCTGTCTCAATGCTCCACACACCCTCAAACTCTGCAAAAGAGTGATAGATTAGCTGGTCCGATGGTAAAGCTCCCAGCAGGTGTAAGCCAGTGTAGTAAAAAGCTaatcacaggaaaaaaaaattgtacctTTTGCCAACTGAATTATAACACAACATTCTatactttatatttacaaatatttgcttTGTCTGAAAGAGGATATTTAGAAAATCctcaatatatacattcaatcactttatatatacatatataaatatatatatatatatatatatatatatatatacacacacagacacacacacacacatactattttaatactgaaaaaaaacaactgtgctCTTTACATTCTTGAGTATAAAAGCTGATGCTCCTGCTgtagtaatatatttaaaactatcTAAACGGAAAGACCAAAGCCTCAATTCCTTGCCTGAATCTCTGCACACCAATACTAAATTGATTTCATTATAGACCTCTGAGTGCTGAATGGTCTTTATTGACCAAGTTATCTGTTGGCAAGTATACTAGCTGATGGGTCCAAACCCAGgacattacaaaaaacagaaagggaAAGGGTTTACAATTTCTATccagaaacatttcaaaaacagtttCCAATACCCAAGGTTCTTTGCACTGTTCTTCCACTCTTGGGAAAAGTCTAGATCCTTAGctcatttaaatgaatagttCTCAGCAAAGCCTTTTTTTGGTaaaatatgtggaaaaaaataataataatagggttAAACAAAAATGGGTTTAGATGCAGtttaaacaatttcaaaaattACGGGGAATGTTTGAATTTCTATACCCAAACGATGACAAGAAAATGAAGAGGCCGTGCTGACACTATATCCCCACACCAGCCACAATCATGTAGCTCAGAAAGGTAATGACTCCTAAAGTGGGCAAAGTAAATCTGCTCCTACCAGCAGTCAAACCTCCCTCAGGCCACAGAGCAGCATGGTTTCAGACTACGTCTCACAGTTAGTTCAGTCAGTTCGTCTGCTGCGTTCATCCAGAATTGGGCAATCACCAAAGCAAACTACCTTGCAGTGGATGACACTTGAGCTTCTGTGTGTCAACAACAGAGTGCAATACTTGGAGACAAGTCTGTGTAGGTGAGGCAAAAAAcctcaacaacaaaaaaaaccctACTTCACAATGTACACACATTTGCTTATCAAATACCATCTGCTGAGACTAATtatcctgttgtttttgttgttttttctccccaaaGACTAGCAATCACCCCTGACAAATGTTACTAAATGTAATACTACTAGCATACAGTGGAACAAAGTTGGTGGAACAGTTACAGTATTTGACAAAGTGATAGCTCCTTGATACCATTTGAGCATCAACATGATTTATGAAAGGGGGCAGCCCCTGATAACTGATAACTGATGTCTTTTCTTAAAAGGAGTATCCCCtttattatctatctatctatctatgtagtGCTTTAATGTTATAGTCCACATTCGAATGAATATGGTAATTCATTTCCAAAATCACAATTAGTATGTCTGTAAATaagtttatattatattcaataatatgctaattatacaatatttaatgcatatatCGCAGGTTAAAGTAATCCAAATATGAccaatattgatttttttttttttttattataattttagtttggtctgttcacacacacacacacacacacacacacacacacacattaaattaGCTGATAGAAATAGCACTTCAGTATGAAGTGTGAATCTTCTGCTGTTACACAAACTTTATTCCAcgtacttttttgttttcattttgcatttaggaatattaatgaaggaaaaaaacatttatgtggAAGATAAATCATAAGGAAAGTAGTCAATGTTTAGCTTAAGGGTAAAGATATATGGTTCGGCCATATTGCAATCTTTAAAACACTAGACTCATAGCCCTGGGGTTTGCTTGAACCAGGGCACATTTTAGAGCAGAAAAAATTGGCTTTATAGTCACATTCTTTTTGGCACATTCTCGTATAGAAAAattcagctttttttcttttttcttcttcaaaaaaCACTCGGCAGCAGTATAAATAGTTAAGATAAGGAAACAAAGGCGCATCGAATAAGGTTATCATCGACAGTAAGCAAACAGTCTCTGTTATATTctgaacacatacaaaacaaacaaaaacagaacaaaaaaacaaaacaaaaacgtaaaCATCCAAGTGCCTGAAATACCAATGTAGCTCACCTTGTTTGAAAAGGTGGTATTTTGttaaatctgtatattttaGCCAAAATGGCGATCATCCTGATAGCCCTCCCCTTctccagatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83575 lncRNA downstream 416453 38277994 ~ 38278539 (-) True G66872
TU83550 lncRNA downstream 513718 38181037 ~ 38181274 (-) True G66851
TU83511 lncRNA downstream 795114 37899467 ~ 37899878 (-) True G66817
TU83474 lncRNA downstream 955795 37736763 ~ 37739197 (-) True G66786
TU83423 lncRNA downstream 1199622 37495123 ~ 37495370 (-) True G66740
TU83640 lncRNA upstream 9785 38707272 ~ 38732240 (-) True G66926
TU83642 lncRNA upstream 26804 38724291 ~ 38772808 (-) False G66927
TU83641 lncRNA upstream 74133 38771620 ~ 38772808 (-) True G66927
TU83715 lncRNA upstream 339673 39037160 ~ 39038645 (-) True G66994
TU83733 lncRNA upstream 378223 39075710 ~ 39092196 (-) True G67010
AMCG00020960 mRNA downstream 236354 38427880 ~ 38458638 (-) True AMCG00020960
AMCG00020961 mRNA downstream 284130 38366127 ~ 38410862 (-) True AMCG00020961
AMCG00020959 mRNA downstream 394573 38278635 ~ 38300419 (-) True AMCG00020959
AMCG00020957 mRNA downstream 434991 38241746 ~ 38260001 (-) True AMCG00020957
AMCG00020958 mRNA downstream 455998 38232666 ~ 38238994 (-) True AMCG00020958
AMCG00020971 mRNA upstream 307943 39005430 ~ 39009794 (-) True AMCG00020971
AMCG00020970 mRNA upstream 350217 39047704 ~ 39080843 (-) True AMCG00020970
AMCG00020974 mRNA upstream 397010 39094497 ~ 39096651 (-) True AMCG00020974
AMCG00020975 mRNA upstream 419948 39117435 ~ 39529985 (-) True AMCG00020975
AMCG00020977 mRNA upstream 949262 39646749 ~ 39666597 (-) True AMCG00020977
TU83462 other downstream 1062416 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 1627200 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 1649053 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 2708296 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 2875162 35813969 ~ 35819830 (-) True AMCG00020887
TU83728 other upstream 352729 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 2902914 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile