RNA id: TU83716



Basic Information


Item Value
RNA id TU83716
length 211
lncRNA type intronic
GC content 0.48
exon number 1
gene id G66995
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 39049421 ~ 39049631 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtggcaacaaggccaagcgactcaactatgcatgaaaacacaggaactggggtgcagaaaaatggcagcaggtgctctggactgatgagtcaaaatctgaaatatttggctgtagcagaaggcagtttgttcactgaagggctggagagcggtatacaaatgagtgtctgcaggcaacagtgaagcatggtggaggttccttgcaagtttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83691 lncRNA upstream 38572 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 624169 38424712 ~ 38425252 (+) True G66887
TU83568 lncRNA upstream 773127 38275990 ~ 38276294 (+) True G66865
TU83564 lncRNA upstream 804946 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 925834 38121779 ~ 38123587 (+) False AMCG00020954
TU83754 lncRNA downstream 255666 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 699526 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 1514571 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 1520696 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 1523923 40573554 ~ 40574856 (+) True G67182
AMCG00020972 mRNA upstream 21894 39012711 ~ 39027527 (+) True AMCG00020972
AMCG00020969 mRNA upstream 44592 38984877 ~ 39004829 (+) True AMCG00020969
AMCG00020968 mRNA upstream 77137 38953485 ~ 38972284 (+) True AMCG00020968
AMCG00020966 mRNA upstream 147816 38898945 ~ 38901605 (+) True AMCG00020966
AMCG00020967 mRNA upstream 164314 38880596 ~ 38885107 (+) True AMCG00020967
AMCG00020978 mRNA downstream 565823 39615454 ~ 39617163 (+) True AMCG00020978
AMCG00020976 mRNA downstream 567677 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020981 mRNA downstream 751648 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020983 mRNA downstream 1161511 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020982 mRNA downstream 1180311 40229942 ~ 40269290 (+) True AMCG00020982
TU83200 other upstream 2131985 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2792910 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 3141019 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 3299067 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3884436 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1271482 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2001841 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 2548592 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3003299 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 3376480 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile