RNA id: TU83857



Basic Information


Item Value
RNA id TU83857
length 709
RNA type TUCP
GC content 0.48
exon number 1
gene id G67108
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40321113 ~ 40321821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaggtccccctgctcaagaaagcacatgttcattggcaaacttcagacaggcctgtacatctgaatgattcagaggagaactgggtgaaagtggtctcagatgagaccaaaatcaagctctttggcatcaactcaactcgctgtgtttggaggaggagaaatGACCCCAAAAACACCATCcacaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatgggtaatccagcatgacaatgacccaaaacacacagccaaggcaacaaagcagtggctcaagaagaagcacattaaggtcctggattGGCCTAGCCAGTGTCCAGACCTTAATCcaatagaaaatctgtggagaggagctgaaggttcgagttgccaaacgtcagcctcgaaaccgtaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacatctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatactgatttccctcattaacatgcaaatcaatgta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83778 lncRNA upstream 571752 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 1015526 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 1271482 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 1310264 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 1895861 38424712 ~ 38425252 (+) True G66887
TU83931 lncRNA downstream 242381 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 248506 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 251733 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 463940 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 464864 40786685 ~ 40791471 (+) False G67207
AMCG00020988 mRNA upstream 1390 40311520 ~ 40319723 (+) True AMCG00020988
AMCG00020990 mRNA upstream 36617 40277322 ~ 40284496 (+) True AMCG00020990
AMCG00020982 mRNA upstream 51823 40229942 ~ 40269290 (+) True AMCG00020982
AMCG00020983 mRNA upstream 91346 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020981 mRNA upstream 257428 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020989 mRNA downstream 47413 40369234 ~ 40386635 (+) True AMCG00020989
AMCG00020987 mRNA downstream 77115 40398936 ~ 40431760 (+) True AMCG00020987
AMCG00020994 mRNA downstream 115517 40437338 ~ 40456772 (+) True AMCG00020994
AMCG00020995 mRNA downstream 168865 40490686 ~ 40530054 (+) True AMCG00020995
AMCG00020996 mRNA downstream 222269 40544090 ~ 40554656 (+) True AMCG00020996
TU83200 other upstream 3403677 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4064602 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4412711 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4570759 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 5156128 35163813 ~ 35164985 (+) True G66149
TU84041 other downstream 729651 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1276402 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1731109 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 2104290 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile