RNA id: TU83938


Basic Information

Item Value
RNA id TU83938
length 1303
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G67182
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40573554 ~ 40574856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAACATATTCAAGTCTGCATTGGAGAAACGCGAAAGGAAATCGACCCCATtacccccaaacacacagactACTACTTCCTGAGCTGCAGGTTTATTTGAATTGGAACACCCTTGGAAAGTAATTGTGAAACCAAATTAACACCACAAAGCAAAACTGCCTATACATGCCTTTCATTATCAGCAGCGTCTCCCCTCTTGATCCCTCTGCATTTGCCTACTGTAGCACTTTACTCCAAAACCAGAGCCAGTGTGTTTTGGTCACGGGGGTAGCCACCTACGTTCATGATCTTTGTATAGgggttaaatttcagactttaCACTAGGGGAAGAATTGAAGGAAACTCCAAATCaaatgatgatgacaatgaaTGCAGGCACTTGAACTTTCCTAAGATCTAGGTCAGTGGTCCTCAGCCCTGGTTCTGGtgcatgtttttgttctggCCAAGCTCTTGATTTCTTAGTTAAATCCTTTATTGAACTAACCAATAATGTGCTTAATTAAGTAGTTTCCATTATGAAAAAGTTGGAGAATTTGAGTATCcagctgtttaaaatcattcaaaagCTCTGAGCAGGCATAATACTGAAAAGAGAGCTCACTTGGGTAGATCAGAGAAAATGACCACAGTTAATTGTATTCAATTTTGACTCCATCtgagaatattttttttgtctcaaaGGAAAGTATTGAAAACTCCCCAAGCCTGGACAGGGGGTTACATTTATAACCCCAGTAGACTaagtttgtaattattttgcataggaaagcaaaacatttgtttgccAACATTTATTTGCTGGAAAACTGCAACAATACATGTCGTTAATGTAATTGTCAAATTgtctttgcttttgttgtttgcaCAAGATTCTTCCATGGGTGAAAACATCCCAGGGATTTATTAAGGGAACCTTGTACTACCTCTGTTGAAAGGTTAAATTACTTCTGTGGAATAAGTACATTATCATTGTATGGCTAGTTACCATGTGTGTTCTTGTATCATGTTTCATTTTACCATTTACAACAAATGTCTCGAGCATTACTATataggctgtttttttttctcttctacCTCCATAGAGTATCCTATTTTCCATTTgcagtgtgttttcatttagtaCATTGTGTGAATTCTTTGATTTTGTGATGCAAATTGATGTATACATTTAgaccacccacacacacacacatgttcacaaatgtttttggggtggggggataaaGTATCAAATAAAGTTCTAGGAAAGATGGTAAGAAAATGCAATATCTGTGAAGACACATTCGAAGTAATAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83936 lncRNA upstream 1832 40570327 ~ 40571722 (+) True G67180
TU83931 lncRNA upstream 3339 40564202 ~ 40570215 (+) True AMCG00020993
TU83778 lncRNA upstream 824193 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 1267967 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 1523923 39049421 ~ 39049631 (+) True G66995
TU83965 lncRNA downstream 210905 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 211829 40786685 ~ 40791471 (+) False G67207
TU83981 lncRNA downstream 375243 40950099 ~ 40965912 (+) True G67221
TU84037 lncRNA downstream 463998 41038854 ~ 41039096 (+) True G67272
TU84078 lncRNA downstream 729331 41304187 ~ 41305221 (+) True G67309
AMCG00020993 mRNA upstream 5522 40555966 ~ 40568032 (+) False AMCG00020993
AMCG00020996 mRNA upstream 18898 40544090 ~ 40554656 (+) True AMCG00020996
AMCG00020995 mRNA upstream 43500 40490686 ~ 40530054 (+) True AMCG00020995
AMCG00020994 mRNA upstream 116782 40437338 ~ 40456772 (+) True AMCG00020994
AMCG00020987 mRNA upstream 141794 40398936 ~ 40431760 (+) True AMCG00020987
AMCG00020999 mRNA downstream 183641 40758497 ~ 40799108 (+) True AMCG00020999
AMCG00021000 mRNA downstream 247713 40822569 ~ 40838773 (+) True AMCG00021000
AMCG00021002 mRNA downstream 335579 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021001 mRNA downstream 349591 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021005 mRNA downstream 476689 41051545 ~ 41062527 (+) False AMCG00021005
TU83857 other upstream 251733 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 3656118 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4317043 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4665152 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4823200 35747225 ~ 35750354 (+) True AMCG00020874
TU84041 other downstream 476616 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1023367 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1478074 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1851255 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile