RNA id: TU84094


Basic Information

Item Value
RNA id TU84094
length 2131
RNA type TUCP
GC content 0.40
exon number 3
gene id G67323
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41598223 ~ 41602113 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAATGTTTGTTTCCACCAAAAATTATGACTACCTAATACAACAACTTAAAGACATTGTggcaattaagaaattaaatctcTCCCTTACTAATATTATCCATTTGTTGTCAAATTAATGGTGACTGTTAGGGAtggtcatttgaaatgtattcagtaGTTGGATAATATCCTTTatttcttcgttttttgtttttttttgatGTTGCGCAAGGGGTGCTAGCAGTAGTGTGATTTAAAATGCGTCAGCCCTTTGGTACCATATTTGACTTTTtcagaattcacttttaaaagtaCTGCAGTATACATTTTAAGTGTACAAAATACACCTCTGAAAAGTCCAGCACGCTCAAAGCTGTGGCAAATTTATGCGTGACGTCACACTAGGACAAGTACACCATCTCTCAGGCTGTTTTCCTGCATTAGTGCTAACGAAAACCAGTTAGCGAACAATAGCGAacgtatgtatgcatgtatgcgtgcgtgcgtgtgtgtgtgttgcccagcgttggactggcgtcccatcctgggtgtattcctgccttgcgccctatgcctgccggggaTCAGCTCCGGCTTCCCTGCTACCCTtgccaggataagcggttttgaaaatggatggatggaactTCGTGAAGACTAGCTATTTCGTACAGAATTCCCGGGCTCCGAGCGCACCTCTTTCTGTGATTTGCGACTCAGTTGGGATGCCACCTGGCCCCACATCCCAGGACATTTAGAGACGGAACAGGTATAAAATTAGCtgctaattttaaataaattaacatattaattATCCCTACACCTTTAGCAAACATTAACTCAGTTGCTGAATAACTGTGCCacaaacaagtcattctgaCGATTCAACATCCTGCCTCCGAACAGTTGAGCAATGTTACCGAATGGGAGAGTAATTGCACGTTATGGCAATTTAATACGTTATTAACAAACAGAAAGTAAACTACTTTAATGTATTAGTGCCTGCATATGACCAAAGGAAATGTTatgattaataatgaaaacagaattaGAACCATGTAAATGTACTACACTTACAGATGCATCCCACAATCCTCTTGTTGGTAACGGAAGGTACTATATGAGGGTCTTGTTTGGACCCAGCATATTGCTTTGGTTTAAACACACTAAAGGGGTCCTGAAACACAAAGAGGTAGAACTTTAGTTTGCATCAtaaaggttttttgtttgtaatttcaatataatatatCTTAAATTAGTAGTCTTATTTGTAAAGAGAAACCCATTTAATaaagtgtaaattaaaacaaccaGCCCCAACATATGGggttgaaaaataatgtttgttcaGTACATTTAATGGTGTAAAACAATAGCCAAGATTACATGCATCTTCATGAACAGGCATCAAGattttttctgtgaaattaCTGGAGTACACTTAACCGTTgtactttatataaaatgtatcatagGAAACTGACCTGAATTTTCAAAGTTGCAAATCACTCTAGTTTTTAGAAGACGTGTGTGGTTTATAGATCGATATACACACAAATCGACTAATACACTTAATACTTTAGATCTGTAagcatatttaaagaaatatgttaTCCTGTTttccttaaattaaaattagttCAACTGAATTTTCCACATTGATCTAAGGTCTATGAAATATGCAGTTGATTGGTAATACTATTTCAAACTTATAGAACTGACCGTGCCCGCTTTCATCGCGTTCATGATTTTCTTCTCCAAACCCGTGGCTTGTTCTTCGTCAGTTGGGATgCTCCCGCCGACATGCCACGGGTGAGGGCTAGTACCGGCGCTGCCCGGCAGCTACTCGCGGCACGAACGGCCGATCTCATAAGTAACCTTGCAGCCATCTCTTCTCCTACAAGCTCTGAAACAAGACAAGCGAAAGAGACTAACAAAGTGCGCCTCTGCCGGATGTCGCAGTTATATGATGTCACAGCAGTCCAGTCAGGTGTGAAGGGAATGGCCGCGTTCACGACACTTCTCTGCCGGCTAGATTGCATACGGGAGTCTGCGTGTGACGTCACAGTCTGTGCAGTCGTGAACGCAGCCGCATACTTTGCCGAGTCTGCGCATACTTTTTCGCATACTCTGCGACGAAACTGTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84093 lncRNA upstream 90122 41507607 ~ 41508101 (+) True G67322
TU84079 lncRNA upstream 200549 41332266 ~ 41397674 (+) True G67310
TU84078 lncRNA upstream 293002 41304187 ~ 41305221 (+) True G67309
TU84037 lncRNA upstream 559127 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 632311 40950099 ~ 40965912 (+) True G67221
TU84155 lncRNA downstream 17182 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 135134 41737247 ~ 41854669 (+) True G67393
TU84188 lncRNA downstream 288558 41890671 ~ 41893979 (+) True G67398
TU84197 lncRNA downstream 382498 41984611 ~ 41985031 (+) True G67405
TU84275 lncRNA downstream 547446 42149559 ~ 42149967 (+) True G67479
AMCG00021009 mRNA upstream 9204 41578384 ~ 41589019 (+) True AMCG00021009
AMCG00021016 mRNA upstream 79378 41459477 ~ 41518845 (+) True AMCG00021016
AMCG00021014 mRNA upstream 227805 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021011 mRNA upstream 299058 41284934 ~ 41299165 (+) True AMCG00021011
AMCG00021010 mRNA upstream 386174 41211431 ~ 41212049 (+) True AMCG00021010
AMCG00021013 mRNA downstream 28566 41630679 ~ 41631432 (+) True AMCG00021013
AMCG00021015 mRNA downstream 55557 41657670 ~ 41658791 (+) True AMCG00021015
AMCG00021021 mRNA downstream 98752 41700865 ~ 41709287 (+) True AMCG00021021
AMCG00021020 mRNA downstream 107365 41709478 ~ 41710229 (+) True AMCG00021020
AMCG00021022 mRNA downstream 109808 41711921 ~ 41740137 (+) True AMCG00021022
TU84041 other upstream 545665 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 1276402 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4680787 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5341712 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5689821 35867393 ~ 35908402 (+) True G66362
TU84255 other downstream 450817 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 823998 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile