RNA id: TU84133


Basic Information

Item Value
RNA id TU84133
length 1752
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G67358
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41518717 ~ 41520497 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCTTGtggatattttatttgaagacCAATAGCAGATCCTCAGTCCTCCTCAATCATATAATTAAAGTGAGGCAccaaatgcaaataatacattgaatacagattcaaaagtattacaaaatgGATGTATTAAAACTACACTGGGAAGGcaggttattttgtttttaaattcctttaTTTCCAATTAAAGTGACAGCTTCCTACACAGTAATCATTCtttcacatatttaatttgaagtttaaaagcagaaagaaacagaatttCAAACAGATGCAAACACTTTCAACAATATGATTAAAGACGACATTAAAAGAGCAAGGGAAAATATTGAGAGCACTTGAAGATGCTTACTTTTTGTAGCTCCGCCTTCCTCCAGTACTCAAATATGATAATCATTGTTAGAATTCAACCCTCAACCTATAGCTGATGTTCCTCCACTTACACCACACATCAGCCTCCAATAAATTAGGTGCATCTATAAGCTtggacacacatacatacaggaGCAAACATCTTCAGTCACGGAATCTGTTAAAGGCACACAGCATAAAGGACccataaataaacaagtgaaGAATCATGAAACCAACACAAAAATCTTATTTCAACACCACCACTGCAACCCTTTGCTTTAGGGGACTAAAATAAGGCTTATTTTAACATTGAGCTCATGCAAAACTGTATAGTGGGATACAGTTAGCAGAGCTAATTCTGCTAATTCTTGATGGATTTGTTCACTATGCTTATGCAATAATCAAACCTTGATCTGAAAGTctacattttgttaattcacAGCAAgctcattttatttgaataatgttcAAGTCTCCCCATGTAATATCAAGTTTCCAGATATTACACTATGAACAATTCTTACCAAAAATCACATTATAATCAGACTCCATATAAAAGAGTATGAATGCAGCAAAATTGTAAGAATGAAGGTGACACGattgaaaaaagaaataccACTATCCTTCTTCAGAGTTAAAGGCTGAACGAAGGCAAAATAACTCATTACCTTACAATACCTTATTCAAAATATAACTACTGCCCCCCCCAACATAATTTTGGGtcagtgtattttcattacattaaatcagACTTAAGTGTTGCAAaggtagaaaaaatatatacttttgggtccttgtttaacaaaatacagtgaCAGCTGAAGCAGTCTTTGGAATAATTTTATGCTAAGAACTTAATATGCAGCGTTATAAATTCTTTTTAGGATTAATTTGTCTGAAATGTTATGCATCACGagaattttatatttcaatggaTGGCCTAGTcgatcaattttaaaatatacagtttaggGGAAGCACTGGtccattaacaataaaaaaatattctaaaaacgaattaatttttctttaacgtaaataatttcaaatttctATGCtaaattttttaatttctgaagtTCCATGCCTTGTCTTCAATGGAGCTGGTCCTTATTCTGTTGCATCAAACTCTTTGTAATAACAAACCAATCAAAGGCCTTATTTTCCTGATCCCCCACGTCGTTTGTGTAGTCCTTGAAGGTGGGACTGATCTCGAGGGGAAGGCCCACTTCTAATATGAACTTCACGCAAGTGGGCAGGCAATGGCTTAGAGAAGTTCCACGTAATTGGCTGGGAACATCCCAAACCCTCCATCAGGGCCATAGCCTCGCCACCAGCCTTCATCAATCATCTCAATCCCAGTGATGATGTCATCAGGGTCGAAAGAAATCTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84127 lncRNA downstream 10624 41507719 ~ 41508093 (-) True G67352
TU84113 lncRNA downstream 37578 41474305 ~ 41481139 (-) True G67339
TU84107 lncRNA downstream 49469 41459463 ~ 41469248 (-) True G67334
TU84067 lncRNA downstream 254248 41256169 ~ 41264469 (-) True G67298
TU84052 lncRNA downstream 415493 41102719 ~ 41103224 (-) True G67283
TU84135 lncRNA upstream 29918 41550415 ~ 41570291 (-) True G67360
TU84148 lncRNA upstream 72024 41592521 ~ 41592729 (-) True G67368
TU84151 lncRNA upstream 75583 41596080 ~ 41597523 (-) False AMCG00021012
TU84234 lncRNA upstream 370541 41891038 ~ 41893984 (-) True G67440
TU84258 lncRNA upstream 554826 42075323 ~ 42075754 (-) True G67462
AMCG00021008 mRNA downstream 151360 41366724 ~ 41367357 (-) True AMCG00021008
AMCG00021006 mRNA downstream 376023 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021003 mRNA downstream 514523 41000180 ~ 41004194 (-) True AMCG00021003
AMCG00021004 mRNA downstream 519059 40997807 ~ 40999658 (-) True AMCG00021004
AMCG00020998 mRNA downstream 789091 40661926 ~ 40729626 (-) True AMCG00020998
AMCG00021012 mRNA upstream 76155 41596652 ~ 41602153 (-) True AMCG00021012
AMCG00021026 mRNA upstream 153112 41673609 ~ 41687703 (-) True AMCG00021026
AMCG00021027 mRNA upstream 454362 41974859 ~ 41975161 (-) True AMCG00021027
AMCG00021028 mRNA upstream 480152 42000649 ~ 42117898 (-) True AMCG00021028
AMCG00021031 mRNA upstream 716744 42237241 ~ 42238378 (-) True AMCG00021031
TU83728 other downstream 2413850 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 3886141 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 4450925 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 4472778 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 5532021 35975764 ~ 35986696 (-) False AMCG00020900
TU84154 other upstream 79904 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile