RNA id: TU84182



Basic Information


Item Value
RNA id TU84182
length 276
lncRNA type read_through
GC content 0.51
exon number 2
gene id G67393
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41737247 ~ 41854669 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctgcaccgcatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggattggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaacctta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84155 lncRNA upstream 117638 41619295 ~ 41619609 (+) True G67371
TU84093 lncRNA upstream 229146 41507607 ~ 41508101 (+) True G67322
TU84079 lncRNA upstream 339573 41332266 ~ 41397674 (+) True G67310
TU84078 lncRNA upstream 432026 41304187 ~ 41305221 (+) True G67309
TU84037 lncRNA upstream 698151 41038854 ~ 41039096 (+) True G67272
TU84188 lncRNA downstream 36002 41890671 ~ 41893979 (+) True G67398
TU84197 lncRNA downstream 129942 41984611 ~ 41985031 (+) True G67405
TU84275 lncRNA downstream 294890 42149559 ~ 42149967 (+) True G67479
TU84316 lncRNA downstream 541056 42395725 ~ 42395996 (+) True G67519
TU84321 lncRNA downstream 549152 42403821 ~ 42404266 (+) True G67521
AMCG00021020 mRNA upstream 27018 41709478 ~ 41710229 (+) True AMCG00021020
AMCG00021021 mRNA upstream 27960 41700865 ~ 41709287 (+) True AMCG00021021
AMCG00021015 mRNA upstream 78456 41657670 ~ 41658791 (+) True AMCG00021015
AMCG00021013 mRNA upstream 105815 41630679 ~ 41631432 (+) True AMCG00021013
AMCG00021009 mRNA upstream 148228 41578384 ~ 41589019 (+) True AMCG00021009
AMCG00021019 mRNA downstream 40164 41894833 ~ 41934745 (+) True AMCG00021019
AMCG00021023 mRNA downstream 128714 41983383 ~ 42015154 (+) True AMCG00021023
AMCG00021025 mRNA downstream 208048 42062717 ~ 42091656 (+) True AMCG00021025
AMCG00021024 mRNA downstream 268148 42122817 ~ 42125001 (+) True AMCG00021024
AMCG00021029 mRNA downstream 568674 42423343 ~ 42464183 (+) False AMCG00021029
TU84094 other upstream 135134 41598223 ~ 41602113 (+) True G67323
TU84041 other upstream 684689 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 1415426 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4819811 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5480736 36254699 ~ 36256511 (+) True G66506
TU84255 other downstream 198261 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 571442 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile