RNA id: TU84197



Basic Information


Item Value
RNA id TU84197
length 297
lncRNA type intronic
GC content 0.49
exon number 2
gene id G67405
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41984611 ~ 41985031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cccaattctcctctgaatcattcagttatttattggcaaacttcagacgggcctgtacatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcaatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84188 lncRNA upstream 90632 41890671 ~ 41893979 (+) True G67398
TU84182 lncRNA upstream 129942 41737247 ~ 41854669 (+) True G67393
TU84155 lncRNA upstream 365002 41619295 ~ 41619609 (+) True G67371
TU84093 lncRNA upstream 476510 41507607 ~ 41508101 (+) True G67322
TU84079 lncRNA upstream 586937 41332266 ~ 41397674 (+) True G67310
TU84275 lncRNA downstream 164528 42149559 ~ 42149967 (+) True G67479
TU84316 lncRNA downstream 410694 42395725 ~ 42395996 (+) True G67519
TU84321 lncRNA downstream 418790 42403821 ~ 42404266 (+) True G67521
TU84328 lncRNA downstream 488627 42473658 ~ 42473885 (+) True G67528
TU84333 lncRNA downstream 498497 42483528 ~ 42483927 (+) True G67533
AMCG00021019 mRNA upstream 49866 41894833 ~ 41934745 (+) True AMCG00021019
AMCG00021017 mRNA upstream 122733 41841031 ~ 41861878 (+) True AMCG00021017
AMCG00021018 mRNA upstream 201764 41755505 ~ 41782847 (+) True AMCG00021018
AMCG00021022 mRNA upstream 244474 41711921 ~ 41740137 (+) True AMCG00021022
AMCG00021020 mRNA upstream 274382 41709478 ~ 41710229 (+) True AMCG00021020
AMCG00021025 mRNA downstream 77686 42062717 ~ 42091656 (+) True AMCG00021025
AMCG00021024 mRNA downstream 137786 42122817 ~ 42125001 (+) True AMCG00021024
AMCG00021029 mRNA downstream 438312 42423343 ~ 42464183 (+) False AMCG00021029
AMCG00021034 mRNA downstream 640353 42625384 ~ 42919615 (+) True AMCG00021034
TU84094 other upstream 382498 41598223 ~ 41602113 (+) True G67323
TU84041 other upstream 932053 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 1662790 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 5067175 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5728100 36254699 ~ 36256511 (+) True G66506
TU84255 other downstream 67899 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 441080 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile