RNA id: TU84276


Basic Information

Item Value
RNA id TU84276
length 374
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G67480
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 42149593 ~ 42149966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagcaattaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaagctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataacagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcct

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84258 lncRNA downstream 73839 42075323 ~ 42075754 (-) True G67462
TU84234 lncRNA downstream 255609 41891038 ~ 41893984 (-) True G67440
TU84151 lncRNA downstream 552070 41596080 ~ 41597523 (-) False AMCG00021012
TU84148 lncRNA downstream 556864 41592521 ~ 41592729 (-) True G67368
TU84135 lncRNA downstream 579302 41550415 ~ 41570291 (-) True G67360
TU84322 lncRNA upstream 253855 42403821 ~ 42404270 (-) True G67522
TU84334 lncRNA upstream 333619 42483585 ~ 42484218 (-) True G67534
TU84337 lncRNA upstream 435861 42585827 ~ 42586109 (-) True G67537
TU84367 lncRNA upstream 742170 42892136 ~ 42892423 (-) True G67565
AMCG00021028 mRNA downstream 31695 42000649 ~ 42117898 (-) True AMCG00021028
AMCG00021027 mRNA downstream 174432 41974859 ~ 41975161 (-) True AMCG00021027
AMCG00021026 mRNA downstream 461890 41673609 ~ 41687703 (-) True AMCG00021026
AMCG00021012 mRNA downstream 547440 41596652 ~ 41602153 (-) True AMCG00021012
AMCG00021008 mRNA downstream 782236 41366724 ~ 41367357 (-) True AMCG00021008
AMCG00021031 mRNA upstream 87275 42237241 ~ 42238378 (-) True AMCG00021031
AMCG00021032 mRNA upstream 96031 42245997 ~ 42269261 (-) True AMCG00021032
AMCG00021030 mRNA upstream 152960 42302926 ~ 42315442 (-) True AMCG00021030
AMCG00021033 mRNA upstream 172141 42322107 ~ 42350197 (-) True AMCG00021033
TU84154 other downstream 547323 41600401 ~ 41602270 (-) False AMCG00021012
TU83728 other downstream 3044726 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 4517017 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 5081801 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 5103654 37040447 ~ 37045939 (-) False AMCG00020923

Expression Profile