Fish Transcriptome and Expression Database

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ecological fish

RNA id: TU84328

Basic Information

Item	Value
RNA id	TU84328
length	228
lncRNA type	inter_gene
GC content	0.58
exon number	1
gene id	G67528
representative	True

Chromosome Information

Item	Value
chromosome id	CM030127.1
NCBI id	CM030127.1
chromosome length	42978078
location	42473658 ~ 42473885 (+)
genome version	AmiCal1_2021_bowfin_Genome
species	bowfin (Amia calva)

Sequence

gccgaatccgtccttGACTCACTGACTACTCaacttgtccagtcactggtcctctcccgcctggactactgcaactccctcctggccggcctgcctgcaactactacccgcccgctccagctcatccagaactctgcggctcgtctggtattctctcttccccgattcgcacatgctgctccgctccctccactgactcccgataccagcacacattcagtttaagac

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU84321	lncRNA	upstream	69392	42403821 ~ 42404266 (+)	True	G67521
TU84316	lncRNA	upstream	77662	42395725 ~ 42395996 (+)	True	G67519
TU84275	lncRNA	upstream	323691	42149559 ~ 42149967 (+)	True	G67479
TU84197	lncRNA	upstream	488627	41984611 ~ 41985031 (+)	True	G67405
TU84188	lncRNA	upstream	579679	41890671 ~ 41893979 (+)	True	G67398
TU84333	lncRNA	downstream	9643	42483528 ~ 42483927 (+)	True	G67533
TU84336	lncRNA	downstream	111942	42585827 ~ 42586035 (+)	True	G67536
TU84366	lncRNA	downstream	418143	42892028 ~ 42892439 (+)	True	G67564
AMCG00021029	mRNA	upstream	9475	42423343 ~ 42464183 (+)	False	AMCG00021029
AMCG00021024	mRNA	upstream	348657	42122817 ~ 42125001 (+)	True	AMCG00021024
AMCG00021025	mRNA	upstream	382002	42062717 ~ 42091656 (+)	True	AMCG00021025
AMCG00021023	mRNA	upstream	458504	41983383 ~ 42015154 (+)	True	AMCG00021023
AMCG00021019	mRNA	upstream	538913	41894833 ~ 41934745 (+)	True	AMCG00021019
AMCG00021034	mRNA	downstream	151499	42625384 ~ 42919615 (+)	True	AMCG00021034
TU84320	other	upstream	7772	42426111 ~ 42465886 (+)	True	AMCG00021029
TU84255	other	upstream	419983	42052930 ~ 42053675 (+)	True	G67459
TU84094	other	upstream	871545	41598223 ~ 41602113 (+)	True	G67323
TU84041	other	upstream	1421100	41051472 ~ 41052558 (+)	True	AMCG00021005
TU83857	other	upstream	2151837	40321113 ~ 40321821 (+)	True	G67108

Expression Profile