RNA id: AMCG00021062


Basic Information

Item Value
RNA id AMCG00021062
length 2927
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00021062
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 1965812 ~ 1973074 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGTGTATGAGACGAGCGGCGCAGTGtctgctgccccctgctggagagCCGGGGCCCCGCAGCTACAGTGCGGCCGCACAGCGGGACGGTGTCGTAAAGACGGCCAGGCCCCTGTCCGTGTCGTGCTGGTGTCCGGGGTGGCGTGCGctctggCTCCTGCCCAGCCTTTGCTAAACACATTTCTAATCATGACAAGTGAAACCGAGGACGCTGAGAGTGAACGCTTGTCCGGGAATTATGGAGACGCGTCGTTTGAGTCGTGGCCAAGATGCCGGAGCAGAGAGGGCAGTGTGGGGGGTTACAGCCGTGACTCCTTCGATTCGTTCCGCTCCGGCGACGGGTTCGATCCACCGGCGGAGAGCACGGCAAAGCACAGAGCGTCCGTGACGGGACCTGACGAGTTTGAGCCACAGGAGGAGAACGAGAGCACGGCCGAGGAACTGCGAGGAAAATGGGTCCGGGTTCTCCGGGGCAAAGCCTCCCTCTCTGGTGCCGCCCAGAATCGCAGATCAGACAGCCGTCCGCACCGAGATGTTTCCAAACTGGGCCCTGAGGAGAAGGACGCTTTGAGCTCCTACTGCAGAAGGAAGATCAGAGTCGTCCAGCAGCCCCAGAGAGCGCCCCCATCTGGAGGCCGCGGGGAACTGAGTCGGCGCATCTCGGCGGGTCGGGCGGCGCCGGGGGAATCTGCGGGCTGCGTCGTCCCGCCGCCGATGGTGTCGAGGCTGAAACTGAAGAGTTTAGTGGAGACCATGAAACAGGCCGTGGCGGTGGACATGCACGACCCGGGCCGCTGCGGACCCTGTCTCCACACACGGGCTGCTCTCGCCAGAAACGCTTTCATCAGAACAAAGAAGACCCGACTCGACACAGTGTTGCTACAAGACAAATTCGAGGAAGCCGTCTTCACCAAGGACCCCATCTGCCTTATTGGAGAAATACTGAGAGATCTTCCCAAGCTGTCTGACGATCCCAGTGAGATTTGGCGAGCCCTGACTACACAACACAAACGCTCGCCCCCTCGAGACAGCTGACCCGAGGACACGGCTTTCAACGGCGGAGAGAAGTAACAACGCTGGGGGAGAAATCGCACAGAGGTGTTTCTCCATCCCAGCCACAGTCAGGACCTGTAGGTCGAGGATTCCTCTCATGTTTGCGGAAATCAATatattgacagttttttttgtttggtttttattaaacacacaatttaaaattcaCAGAAGGCCAGACGAGTTGAGCGCCGAGGGAATCCACCTGGAATGAGAATCGTTGTAAAAAAAGAGATGTAGTTGTAATGGTTTGGAAAGGAAGCAACTTTAAGGTTGTGAATTATAACGATGATGAAAaagattattaatattgtgtgtttttaggcTTCATGTAAAGATTTTATTGCACATATTGTATCTGTGATGAGTAACTAATTCTACACATGGGTTTAACACGGTTACATCTGGAGGCAAAGGTCATTTGTTTCAGCTTAACAAGAAGAAACTAAACACTATCGATACATTGCAGAGGGGAAACATTGAATAACTCGTCGTGTTGTGTTGTGAAGTGAATCCAGGAGATCCTCAGCTCAGTTTATCTTGCCTGGCGTTACGTCTCCCCTTGGGACTTGTTATGGATAGTCAGTCTCCTCTGATTACATAATAAGAAGTGGCTGAAGTAGACGTTAAAGTGATTTATTCACCTCTTGCCCATATTGTGTCCAGCAAGATCTGTTTTCTGACAGAATGTGGGCAAAGAAGCTCAGTGCTGgcaaaacacagacactcacGACAAAAGGGACATCAGTATTCGACAACACGCTTATAATCTAAAAACAGTTGTGCCATCTGAGCAGGAGGTTCCCACAGAGACGCCGGCGGGTCTTCAGTCAGACCCAGACTTCTCGCTCCCTGGCGTTTCTGAAAGACTGGAGAGCCACGATGGGACGGGAACCGCAAGACGGCATTCATCGATTGTGAAACACAAACTCGTTCTTTGCCCCCCCACAGGAACGTGaggctttgtgttttttagcTTTCTGAAGGGACAgatgctctgtgtttgtgttaaacgAAGGAGAGAGAATTAAATCTGtgtctgaaaaataatgaagacaAATCTGACGTTTAGCCTTGAATGATGAGAACGAGAGTCTGACAGCCACTGAGGCAGCGAGTTGTGGCTCCAAAAGCATCTCTGAGTAATCTGGTCCATTCAGGCTTTGGTACAGATTGTATGGCCAAAGCCAAACGGAGATCTGTCCACTTGTTAGCCAGTGCAAGTGCATTCAGATGATAACAACCAACATGGGGTACGCAATATACACAATGGAAGCCAAAGGGTACAAGATGTCAACTTTGAAACCTAGCCTTGCTTTCATTGGCACGATTTAGCCACATTAGTGAGCCTGGCCCCCATATAAATGATGTTCTTTTAGAATCCTTAAACATTtagcctggaccaaatcaaagcCTTAACGTCCTAGCAAATCGCAAATAGAAAACTACCCCAACGCAGTTTATATTACACTCAGAGGCCACGATCTCCTACTTTTGAATAAATAGTGTATGAGTCAGTCATGTACAATTCGCTGGCAGTGCAATGGTGGATTTGGTCTGCGTCATCCAAAGGTTTTGTAAATACAGGTCTGTTCAACTCCaatgttggttgtttttttttgtaatgtatttatggGTCTGTTTCCAGCAGACACATTCCAGTAATGCTACTGTTATGTATGTGTAATTACTTTTCCAAATTAATCTTCTTCAAACACAGAATTTGTTTGTTGCCCTCTGCCTGGCATTGCTAACAAAGATACTCGATTCAGCAGGATATGAAATGTAACAGATGCAGCTTTTTATAATAGTAGAAGAAGCAAGACCAATTCTGGcagcttaaaaaacaaactcatcTTGGCAAAGTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103914 lncRNA upstream 46502 1917728 ~ 1919310 (+) False AMCG00021063
TU103850 lncRNA upstream 619041 1346451 ~ 1346771 (+) True G83221
TU103770 lncRNA upstream 1183156 777159 ~ 782656 (+) True G83153
TU103771 lncRNA upstream 1184480 777159 ~ 781332 (+) False G83153
TU103717 lncRNA upstream 1679680 285921 ~ 286132 (+) True G83114
TU103978 lncRNA downstream 110040 2083114 ~ 2083451 (+) True G83325
TU103991 lncRNA downstream 132108 2105182 ~ 2106906 (+) True G83338
TU104037 lncRNA downstream 228220 2201294 ~ 2201559 (+) True G83374
TU104040 lncRNA downstream 246019 2219093 ~ 2221723 (+) True AMCG00021076
TU104074 lncRNA downstream 305722 2278796 ~ 2293041 (+) True G83397
AMCG00021063 mRNA upstream 46446 1917488 ~ 1919366 (+) True AMCG00021063
AMCG00021058 mRNA upstream 226806 1709333 ~ 1739006 (+) True AMCG00021058
AMCG00021052 mRNA upstream 913630 1045175 ~ 1052182 (+) True AMCG00021052
AMCG00021049 mRNA upstream 1039339 918017 ~ 926473 (+) False AMCG00021049
AMCG00021050 mRNA upstream 1067932 879806 ~ 897880 (+) True AMCG00021050
AMCG00021071 mRNA downstream 68750 2041824 ~ 2048003 (+) True AMCG00021071
AMCG00021070 mRNA downstream 104350 2077424 ~ 2081654 (+) True AMCG00021070
AMCG00021074 mRNA downstream 141357 2114431 ~ 2145920 (+) True AMCG00021074
AMCG00021073 mRNA downstream 178094 2151168 ~ 2156894 (+) True AMCG00021073
AMCG00021076 mRNA downstream 236408 2209482 ~ 2230147 (+) False AMCG00021076
TU103781 other upstream 1039337 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1824767 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 2154197 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 2257898 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 5142307 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 5142307 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile