RNA id: AMCG00021067


Basic Information

Item Value
RNA id AMCG00021067
length 945
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00021067
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 1926713 ~ 1927858 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTACTCAGAACGCCAGTCATGATGAGTTTAGTGGACATTTCCAAGATGTTTTCCATGCTGCAGcccagagaggaggaggacgacgGCGAGAGACAAGAGCTGCACCAGGCGGTGTCCAACGATGACGACGGGCTCCTCGCAGAGCTGCTCTCCCAGGACAGATACCGGCGGTTCATCGACAGCAGGAGCGGCTGGGGAGTCCCGGGCACCCCCCTGCGCATGGCGGCGTCACGGGGCCACCTCCGGTGCCTAGAGGTGCTGCTGGCCCGCGGGGCGGAGGTGGACAGCCTGGACGTCAAGGCCCAGACGCCCCTCTTCACCGCCGTCAGCGGGAAGCACCTGGACTGCGTCCTCGCCCTCCTCAAGGCCGGAGCGAACCCCAACGGCAGCATCTACAACAACTGCTCCCCGGTGCTCACTGCGGCCCGGGAGGGCGATGTGGACATCCTGAGGGAGCTGCTGCGGCACGGGGCCGAGGTCAACGCCCGCTCCAAGGTCCCCGAGTGGGCTGCCAATGCCACGGCCTGCGGGGGACCTCTTTATCTCTCCGCCGTCTATGGACACCTGGACTGCTTTAAGTTGCTTCTCCTGCACGGAGCAGATCCGAACTACAACTGCACAGAAGAGAAGCTCCTGGCCCGGATCAAGCAGCCCAAGACGGTGCTGGAGATGTGCCTCCGGCACGGCTGTGGGGTCGAGTACATCCAGCTGCTCATCGACTTTGGAGCGAATGTCTACCTGCCCACAATCATCATCGAGAAGACCACCAAGCAGAATGAGGCGGTGGAGCTGATAATCAAAGAAAGAGTTTGTCCCAAAACGCTGATGTCTCAGTCACGCCTTGCAATTCGAAGTTTCCTCCAAACGGCCAACAACACGCATTCCATCGACCGCCTGGACATCCCGCCCATCCTGAGGAACTATTTGAAACACACGACTTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10334 ASB12; ankyrin repeat and SOCS box protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103930 lncRNA downstream 61486 1854882 ~ 1865227 (-) True G83294
TU103932 lncRNA downstream 61486 1854882 ~ 1865227 (-) False G83294
TU103832 lncRNA downstream 1000149 922859 ~ 926564 (-) True G83205
TU103692 lncRNA downstream 1841586 84874 ~ 85127 (-) True G83091
TU103682 lncRNA downstream 1889822 36247 ~ 36891 (-) True G83081
TU103996 lncRNA upstream 151811 2079669 ~ 2080014 (-) True G83342
TU103997 lncRNA upstream 155319 2083177 ~ 2086079 (-) True G83343
TU104000 lncRNA upstream 177206 2105064 ~ 2106398 (-) True G83346
TU104009 lncRNA upstream 212432 2140290 ~ 2141743 (-) True G83352
TU104012 lncRNA upstream 216546 2144404 ~ 2147117 (-) True G83355
AMCG00021066 mRNA downstream 2170 1919383 ~ 1924543 (-) True AMCG00021066
AMCG00021064 mRNA downstream 8889 1905068 ~ 1917824 (-) True AMCG00021064
AMCG00021061 mRNA downstream 74169 1842621 ~ 1852544 (-) True AMCG00021061
AMCG00021060 mRNA downstream 136176 1755516 ~ 1790537 (-) True AMCG00021060
AMCG00021059 mRNA downstream 234098 1673885 ~ 1692615 (-) True AMCG00021059
AMCG00021065 mRNA upstream 3700 1931558 ~ 1952876 (-) True AMCG00021065
AMCG00021069 mRNA upstream 41392 1969250 ~ 1973537 (-) True AMCG00021069
AMCG00021068 mRNA upstream 45927 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021072 mRNA upstream 121338 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021075 mRNA upstream 158768 2086626 ~ 2106886 (-) True AMCG00021075
TU103965 other upstream 45302 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 529143 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 753702 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2820923 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4616634 6544492 ~ 6546577 (-) True G83864

Expression Profile