RNA id: AMCG00021071


Basic Information

Item Value
RNA id AMCG00021071
length 2414
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00021071
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2041824 ~ 2048003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGTATCTCTCTGCGTCTGCGGGCTTTCAGCGCTATCGAGCATCTAAACCGACccaaaatgtctatttttgactCGGGGCTACTGAGTGTCATGGGCCAGAGGTCTACCGGAGCATCGGTGCGGACCCAAAACGTCATGGCCGTGTCGTCCATCGCCAACATCGTGAAGAGCTCCCTGGGCCCGGTGGGGCTGGACAAGATGCTGGTTGACGATATTGGGGACATCACCATTACCAATGACGGGGCCACGATCTTGAAGCTGCTCGAGGTGGAGCACCCTGCTGCCAAGGTGCTGTGTGAGCTGGCGCAGCTGCAGGACCGTGAGGTCGGGGATGGGACGACATCCGTGgtaatACTGGCTGCAGAGCTGCTGAGGAACGCAGACGAGCTGGTGTCGCAGAAGATCCACCCCACGAGTGTCATCAGCGGCTACCGCTTGGCTTGCAGAGAAGCGGTCCGATTTATCAACGAAAACCTGACCATCAACACCGATGAGCTGGGAAGGGAGTGTCTCGTGAACGCCGCCAAGACCTCCATGTCCTCAAAGATTATTGGTACTGACTCAGACTTCTTTGCCAATATGGTGGTGGATGCCGTCATGGCGGTGAAATTCACCGATGCCAAGGGACTGGCGCACTACCCCGTCACCTCGGTCAATGTGCTGAAGGCCCACGGGGGCAGCCAGAGGGACAGCCTCCTGGTGAACGGCTATGCCATCAACTGCACTGTGGCCTCGCAAGCCATGCCCAAGAAAATCACCAATGCCAAGATTGCCTGTCTGGACTTCAGTCTGCAGAAGACCAAGATGAAGATGGGAGTACAGGTGATCATTTCTGACCCAGACAAGCTGGCACAGATTCGCCAAAGAGAGATTGACATCACAAAAGAGCGTGTTCAGAAGATCCTGGGGTCTGGGGCGAATGTCATCCTCACCACAGGGGGCATTGATGACATCTGCCTCAAATACTTCCTGGACGCTGGAGCCATGGCAGTCAGACGTGTACTGAAGCAGGACCTCCGGAGAATCGCCAAGGCCTCAGGCGCCACGGTGTGCTCCTCGCTGGTGAATCTGGAAGGAGAGGAGGCCTTTGACGTCTCCCTGCTGGGCCACGCGGAGGAAGTGCTGCAGGACTGGATCTGTGATGACGAACTCATCCTAATCAAGAGGTCAGTCCCGGCCCAGTTGTCTGCATCCTTGCAGTGGGATAAGTCTCCTAGTCGCTGCTTCTCCCACCACTGGACATTTCTCTCCGTCTCCAGCACCAAGGCGCGCACAGCCGCCTCCCTGATCCTGCGCGGGGCCAACGACTTCATGTGCGACGAGATGGAGCGCTCCGTGCACGACGCCCTGTGCGTGGTTAAGCGGGTCCTGGAGTCCAAGTCGCTGGTGGCCGGAGGGGGAGCAGTGGAGGCCGCACTGAGCATCTACCTGGAGAACTTCGCCACCACGATGGGCTCCAGAGAGCAGCTGGCCATCGCGGAGTTTGCCCACTCTCTACTCATCATCCCCAAGATCCTGGCGGTGAACGCAGCCCAGGACTCCATCGACCTGGTGGCCAAGCTGCGGGCTTTCCACAACCAGGCCCAGATCAACCCCGACCACAAGCACTTCAAATGGCAAGTGGCGCGTTGGCAGGAAGGCTGTCGTGTGTTTGTGCAATGGATCGGTCTAGACCTCGTGAACGGCAAACCCAGAGACAACAAGCAGGCCGGGGTGTTCGAGCCCACCATGGTGAAGACCAAGAGCATCAAGTTCGCCACCGAAGCCGCCATCACCATCCTGCGTATCGACGACCTCATCCGGATCATCCCCGACGAGAAGGAAGGTGGCGGCAGATCGTACCAAGACGCCGTGGCGGGGGGGGAACTAGACGACTGATTAGCAAACCGACCATGTGAAGTGGCTGCTGGCTCGACGCCCTCATCTCGTTcagcactttttcttttccccctgaAGAGGTTGCACAGACTGGTGCTTAAAATTGTCCCATGTTGCTTGGCAGTGTATGGTCTAATTAATAAAGTATACCCTTGGTGTCGTCTGAACGTAGCCATCGTTAAATGCTCGTTTGCTCGAACGCGGTGTTCTTTAATTCCGTGAACTTGTGGAAAAAGATGTGCCTTGCCTTCAAAGGCATTTGTTTGCTGTGATTTTGCACAAAATGTGTGTAGTGGATGTCCTGGCTTAGTTGAATTACATTGCCTAGATGGGTTTGTGGTCTTTAAAGGTAAATGTAACTGAACAATGACCATTCTTTCCACTTGTACCCCTGATCTAAAAACACTGTGGGCTTGAGTCCCTAGCAAAGCACTTTGTAGCATAAATGCATATGAGTTCAATAAAGTGATATATTTCAGTAACACTTACCCTTTTTCTAAAAGGTGTGCATTTTTGGTTTTAGACCATAATTTT

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09493 CCT1, TCP1; T-complex protein 1 subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103914 lncRNA upstream 122514 1917728 ~ 1919310 (+) False AMCG00021063
TU103850 lncRNA upstream 695053 1346451 ~ 1346771 (+) True G83221
TU103770 lncRNA upstream 1259168 777159 ~ 782656 (+) True G83153
TU103771 lncRNA upstream 1260492 777159 ~ 781332 (+) False G83153
TU103717 lncRNA upstream 1755692 285921 ~ 286132 (+) True G83114
TU103978 lncRNA downstream 35111 2083114 ~ 2083451 (+) True G83325
TU103991 lncRNA downstream 57179 2105182 ~ 2106906 (+) True G83338
TU104037 lncRNA downstream 153291 2201294 ~ 2201559 (+) True G83374
TU104040 lncRNA downstream 171090 2219093 ~ 2221723 (+) True AMCG00021076
TU104074 lncRNA downstream 230793 2278796 ~ 2293041 (+) True G83397
AMCG00021062 mRNA upstream 68750 1965812 ~ 1973074 (+) True AMCG00021062
AMCG00021063 mRNA upstream 122458 1917488 ~ 1919366 (+) True AMCG00021063
AMCG00021058 mRNA upstream 302818 1709333 ~ 1739006 (+) True AMCG00021058
AMCG00021052 mRNA upstream 989642 1045175 ~ 1052182 (+) True AMCG00021052
AMCG00021049 mRNA upstream 1115351 918017 ~ 926473 (+) False AMCG00021049
AMCG00021070 mRNA downstream 29421 2077424 ~ 2081654 (+) True AMCG00021070
AMCG00021074 mRNA downstream 66428 2114431 ~ 2145920 (+) True AMCG00021074
AMCG00021073 mRNA downstream 103165 2151168 ~ 2156894 (+) True AMCG00021073
AMCG00021076 mRNA downstream 161479 2209482 ~ 2230147 (+) False AMCG00021076
AMCG00021081 mRNA downstream 200986 2248989 ~ 2277428 (+) True AMCG00021081
TU103781 other upstream 1115349 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1749838 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 2079268 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 2182969 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 5067378 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 5067378 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile