RNA id: AMCG00021072


Basic Information

Item Value
RNA id AMCG00021072
length 3109
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00021072
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2049196 ~ 2057385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGAAGAtgcggtggccctgaagtgcagcAGCGGCTGCGAGATTTGAAGTGCTGAAAAATACGTGTCAGGACAGCGCTGTAACTCTTAGCATGTCAGCACAGGGGACAGAGCAGATCACAGCAATATTCATGACACTTCGCCCCGTTTCTCTCACTCGGctcttctgagaagctgctCCGGCGGGACtggcttgctgtccaatggcgtcagtcaaatatattcacAGTGTAGCTCCCTTCCGTAATCGCttgtgaaaatgctgcagccgctgctttatttttcagcagttgcacttcagggccaccgtactaCGATAATGACAGTAATAACACTATTGCCACAATCACTACTACTAACAACAACGACGTTGAAACTAAGTACATTGttagcctgttttttttttttcatttatcaccAAACACAGCTCTttctacacatatttatattgtaatgcaaTTACAGTCTAATGCTGTTAATAGTGCGGGTTTCTGTCAGCTGTTAATTGAAGGTTATTCGCACAAAGTTGCTTAACGTAGTCCTTCATCCACGCATTTCGTCcagcaaaaacacaattcaTATCTCATTGACAGCACATCGGGAAGTGTAGTTTTTCCTCTTTGTCCTTCAGTCGCGCTGACAGCTCTTAACAATTGACTACAGGTACCACAATGCCGTGCGACTCGCACATGCGCACAAGCGCCCAGCGCCAGCTACCTTGTATCTATTGTTTTGTTGGCATTGTGGATACTCGCTCTGTAAACTGGGATTCACCGAGGGAGCCATGGCGGATGAACAGGAGATCATGTGCAAACTGGAAAACATCAAGGAAATCAGAAATAAGACCATCCAGATGGAGAAGATCAAGTCGCGACTGAAGACCGAGTTCGAGGCCTTGGAGTCCGAGGAGAAGCATCTGAAGGAATACAAGCAGGAGATGGACTTGTTGCTGCAGGAGAAGATGGCTCATGTGGAAGAGCTGAGACTAATCCACGCTGACATCAATGTGATGGAGAACACAATCAAGCAGTCGGAGAATGACCTGAACAAGCTGCTGGAGTCGACGCGGCGCCTGCACGATGAGTACAAGCCGCTGAAGGAGCACGTGGATGCTCTGAGGATGACGCTGGGCCTGCAGCGCCTGCCCGACCTGTGCgaagaggaggagaagctgTCACTCGACTACTTCGAGAAGCAGAAGGCCGAGTGGCAGACGGAGCCCCAGGAGCCGCCGATCCCCGAGTCCCTGGCTGCCGCGGCGGCCGCTGCCCAGCAGCTACAGGCTTGTCTGTCCTGCCATCAGCAAATCCACCGGAACGCACCGATCTGCCCGCTGTGCAAAGCCAAGAGCCGCTCCAGGAACCCCAAAAAACCCAAGAGGAAGCAAGACGAATAAAGGGCATAGTGTTTCACGTCCCTGACCTCCCAGTGAGACTGAAGCATCGACCAGTGCCGACCACTGGGAAACCCCCCccgtttgttttcttttggcttttgtatttttaaaaatatatttaaatgtgatgtAAGCACAACATTTCTTTTGACTTTcatgttagagagagagagagagagagaatgtgtcgTTTGGtgctaatgttttgttttcataaaagtATCCTGTCGCttaaatagacatttaaaagtttgtttgccTTCAGTATTAAAAGTCAAGACACGTGTGAAAACGGAAGAACCAAATTAATGAGCGTAAAAGGGTAACAAGAACCTTAAAACATAACATAGACAGTAATTGCCTGTATGCCAAAACATTTCTTACAACGAGTCCTAATGTCATTTAGTCTGGTTCATGCTTATTTAGCAATTAAGCCGTTTAAGTGTTCTGTTGATGTTAGTATTTAGTGTCGAAGATGAAGGGTTCGAAGTGTAATCCATTAGGGGTAGCAATTTGTGTGTGAAACCAATACCTTTTATGAAGAAAATGATGCCTCCTGTATACATTACCAAATATATAACCTGCCTAGGGCCTCGAATCACTGACATTTATAAAGTCAATTTGATCCTGGCTGCtaatactgtatacagtaaCGTGCCTCTGCAGAAACAGGCAATTAAGTCCGAAACATTCCATTTAATGGTCGTTAATTGGCCAAGGATTAAGTAAATTTATACTACACACtcacagtttttgttgttgtcgtcatTAACTTTTCCATGTCAACCTTTCTCCTGTCTGTGCGTTTCTCTCGTGCCATGTGACCTGGTACCCATTTCAGTGTCCTAATGAGCTTGTTAGATCCCCAATTTGATTTCGGTCTTGGAAGGAAATTCCTGCACTTGATTATTCAGACGTTTAAAATGCACCTGGTTTCTGCCTGGTCTCCCCTGGTAGGCCGACATTACCAATTCTGAGCATGTGGACACTTGGGCTTTATTTGTAATCCTTTGTCTCTGATATTTTGAGAGAGGATTACTAGATGAACACAAGGTGTGCTATATAATAACACACACCCTCTCTGCTATTGAAAATCAAAACCAATAGCAGAAATGGTGTGTTATTATGTAGCACAGCACAAATCCCCTCTTCCTTTTGCAATTGTATTAAAGTATAaagtcttgtgtttttgttgtttttttattgtaggtTGATAGAGTAACATTACATGTCAAATAGCCAAGTCAaggtctttacatttttaaaatacagacattATCAGTTTAGTTTCATAACAAAAAAGGGATTTTGTCGCCAGGGCAGCTGGGTGCATCACCAGTTTCTGAAGTAACATTTTGTTGACAAAACTGGTGTTTCTTTTTCACTGGAAACTAAATTAGATGGTCCATCTTTGTGGGGTTCGAGATCCTATGCCGTTCATGCTGAAGTACTGATAGTAAAGACTCTGGTATTCGTGAAAAGCAATGGATTGTCTGTCATCTAATTCTGTAAACAACGTCCTTTAACCAGCCTGGTCTCTCCTGGGTTCCTGCATCATGTTATTATCTTTTACATAACTGTacataatgtttgtttgtattcaaaagctcattttgtagtgttttgttttcttcttttataaaataatattatgcatataaataaatccaattaGGGTTTTTTGGCCTCAATAAATTCCGTTTGTGCCAACAGA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0048666 neuron development biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24369 ZC4H2; zinc finger C4H2 domain-contaning protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103930 lncRNA downstream 183969 1854882 ~ 1865227 (-) True G83294
TU103932 lncRNA downstream 183969 1854882 ~ 1865227 (-) False G83294
TU103832 lncRNA downstream 1122632 922859 ~ 926564 (-) True G83205
TU103692 lncRNA downstream 1964069 84874 ~ 85127 (-) True G83091
TU103682 lncRNA downstream 2012305 36247 ~ 36891 (-) True G83081
TU103996 lncRNA upstream 22284 2079669 ~ 2080014 (-) True G83342
TU103997 lncRNA upstream 25792 2083177 ~ 2086079 (-) True G83343
TU104000 lncRNA upstream 47679 2105064 ~ 2106398 (-) True G83346
TU104009 lncRNA upstream 82905 2140290 ~ 2141743 (-) True G83352
TU104012 lncRNA upstream 87019 2144404 ~ 2147117 (-) True G83355
AMCG00021068 mRNA downstream 75088 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021069 mRNA downstream 75659 1969250 ~ 1973537 (-) True AMCG00021069
AMCG00021065 mRNA downstream 96320 1931558 ~ 1952876 (-) True AMCG00021065
AMCG00021067 mRNA downstream 121338 1926713 ~ 1927858 (-) True AMCG00021067
AMCG00021066 mRNA downstream 124653 1919383 ~ 1924543 (-) True AMCG00021066
AMCG00021075 mRNA upstream 29241 2086626 ~ 2106886 (-) True AMCG00021075
AMCG00021078 mRNA upstream 100264 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021077 mRNA upstream 173123 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021082 mRNA upstream 344789 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021085 mRNA upstream 465475 2522860 ~ 2576954 (-) True AMCG00021085
TU103965 other downstream 71228 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 399616 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 624175 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2691396 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4487107 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10469708 12527093 ~ 12527694 (-) True G84814

Expression Profile