RNA id: AMCG00021073


Basic Information

Item Value
RNA id AMCG00021073
length 2340
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00021073
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2151168 ~ 2156894 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGGGCTGATTTCAAGGCCGTTTGACTCTATCTGTACTGGGACCTTCCTGACTCTGCAGATTTCCGCAGCATGGCAAGGTGTGTGCGACTCCgctctctgctctctgtacTCGCTCCCGGGAGGCTGTGCCATGGGAAACGGCCAGTGTCAGGATATTTCAGGAGCATCCAGACAGCGCCGGCCTCCCAACACAGATGCTTCAGCAGCAGCCCGATCGTTCATAGCAGTTCACCTGAGAACAGCAAGTCTGACGACAAGGTGGTCGTGCACTTTGTGAACCAGGAGGGACTCAAGACGACCACGGTGGTGACGGAGGGTGAGACTTTATTGGATGTCGTGGTCAACAAGAATCTGGACATCAGCGGATTTGGAGCCTGCGAGGGGACTTTGGCCTGCTCAACATGCCACCTTATCTTGGAAGAAGACATTTATGAGAAAATGCCCCCGATGGTGGATGAGGAGCTGGACATGCTTGACCTTGCCTATGGACTGACCAAGACGTCTCGTCTCGGCTGTCAGCTGTGTGTTCAGAAGTGGATGGATGGCATGACGGTCTGTGTACCTCAGCAGGTCCAAGACATCCGAGCCACGGTCGAGTCCAGGAAGAACCAGTGACTCTCTGCTCCGGTCCAGAGCTGCTCTGAGACTCGTAGAGACGCCTCCGCAGACCCCTCTCGTGTTTAAGTACAGAGCTCTCGTCTCTCCGTCCCGTCCAGAGCTCTCCGGCCCCAGCGTGTCCGGCCACTGGTTCTGAGCCCGTAATTATAAAATCATGAGTGCCATTGGTTCTGTTGCCATATTAGCATTTATACTGAGCCTGGTCCTGTTGGCCCATTTATCTTATCCACCATTGCAGTTGACTTCCCTGTTAAACAGACTGAAGAGCGGCCATTTACATGCTTCTAAGATCTTTCCTCTAACTACCCTTCCATTGCTATAAGTGCATTTTGACGTTAGCTTTTTAGATTGGCCGCTGAGGGACACCTCTCCTTTGATTTCGCTCGCTTCATATTTATTAACACTGAAATTACAGCAATACATTCCATGTAGGCTCATGTGGAgataattcattttaatcattatGTATATCTAAGTAAAGTGTAGCCCGAGGAGTCACAGCGATGGTTTCGTGTTGCTCATTACAGATAAAGGTAAAGCGCCTGCAGTGGCTGTCGTTCTCTGCTCGCTGCCTCTGAGCGTGTCTGTGAAACACAAAGCAGTGTCAGCTTATGAACACCGTGCTATCAAAGGGAACGAGGCGAGAAACAAGACTCCTGTGCCACAGTGGATCAGAGGCCGCAGGGTTACTTTACCACCGGGGGGCACCACGACTGGCAGAGTGTAAGGTGATATTTTAGACAACCACATTGGTGGTTCTATCTACCAGTAAATAATGTCGGCACTATTTACTCAGTGCTTCAGGGAGAAAACTGCTCAGAGCCCAGATCAcactcccacaatgcacctctCTGTTCTGATCGGGATGGGAGGACACTGCGGCCCCCAGCTCCTCTCATGTCACCAGAACCTGCCGGGGCGGGACGACAGGGCACCATCTTCCTCCAGATATCTGTGAAGATTTGAAACCTTTTAAACACATTGTAGACAAGCTGTCTCGTGGATCTGTCTGTGATCCCAGTACTCCATGAAAGAAAGGTGTCCTTGGCGGGCAGGTGttttttacacaatgttttattcagcGAAGGCAGTGATTTCCTTATTTTGTTGAGCAGATGTTCATTATTCGCAGTTCACGGATGTAATTCTCTACTCAAAGCAGGCAGATGAGGCAGGGGAGATGGCTGCATCTCTCAGAGCTTTATAAAACATGTGTTTCAGCCTGGGAATGTACACTTTgcaaaactgtattattttctgtattttctgtttctgaagAATGGAAACTAAACACCTCTGTATGCCTTATCcttaaagtaattttaatgaCAGTGTGAGGGCCTGTACCCAGAAGCAGGCATTGATCTGCTTATAAACAGAAAGACACCAACATAAACTTTCCTCGGGTTTCATcctaaatatttatgtttggtTCTTGCCTGCCCAGGTTCTTTATTTCAAGATGGAGCTGTTATACAGGCACTGTCCAGCAGGGGGCTGTATGTATCCGTGTGACAGTTTATAAAGCCACATTCTCCTCGATATTAAAATTGTTTGTATTGTCAGTGAATATTTATGCAAGTGACTCATTAACTGGGCAAAGAAAGGCTATATATTCCAATTTGCATGGTAAAACAGGATCATATATTTCCCCACCAAGAGAACAACCCAGACCGAATAAACTTTGTCCCCCCTCCTGTACTTGCACTGGAATTTCT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103991 lncRNA upstream 44262 2105182 ~ 2106906 (+) True G83338
TU103978 lncRNA upstream 67717 2083114 ~ 2083451 (+) True G83325
TU103914 lncRNA upstream 231858 1917728 ~ 1919310 (+) False AMCG00021063
TU103850 lncRNA upstream 804397 1346451 ~ 1346771 (+) True G83221
TU103771 lncRNA upstream 1369836 777159 ~ 781332 (+) False G83153
TU104037 lncRNA downstream 44400 2201294 ~ 2201559 (+) True G83374
TU104040 lncRNA downstream 62199 2219093 ~ 2221723 (+) True AMCG00021076
TU104074 lncRNA downstream 121902 2278796 ~ 2293041 (+) True G83397
TU104109 lncRNA downstream 359365 2516259 ~ 2516915 (+) True G83427
TU104126 lncRNA downstream 365969 2522863 ~ 2525979 (+) True G83443
AMCG00021074 mRNA upstream 5248 2114431 ~ 2145920 (+) True AMCG00021074
AMCG00021070 mRNA upstream 69514 2077424 ~ 2081654 (+) True AMCG00021070
AMCG00021071 mRNA upstream 103165 2041824 ~ 2048003 (+) True AMCG00021071
AMCG00021062 mRNA upstream 178094 1965812 ~ 1973074 (+) True AMCG00021062
AMCG00021063 mRNA upstream 231802 1917488 ~ 1919366 (+) True AMCG00021063
AMCG00021076 mRNA downstream 52588 2209482 ~ 2230147 (+) False AMCG00021076
AMCG00021081 mRNA downstream 92095 2248989 ~ 2277428 (+) True AMCG00021081
AMCG00021080 mRNA downstream 192785 2349679 ~ 2353070 (+) True AMCG00021080
AMCG00021079 mRNA downstream 213185 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021084 mRNA downstream 301035 2457929 ~ 2480032 (+) True AMCG00021084
TU103781 other upstream 1224693 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1640947 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1970377 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 2074078 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4958487 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4958487 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile