RNA id: AMCG00021075


Basic Information

Item Value
RNA id AMCG00021075
length 2823
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00021075
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2086626 ~ 2106886 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCGCTCAGGCCGGAGCCATAGAGTGTAAACACATAGATCTGCGCGTCTGTGGCCGGAGCGTCGTCTGCGGAGCTACCGCGCAACCGACCTTGCGTGCGTGTTTGTGTGGGCGGGGCAGGGGCCGCAGATCTCGCTTCCTATTGGCCTGTCTTCGCGGATGTGGGCGTGACTGTTAGGTTGTGGCGGGTCCATGCTGTGGTCTGCGCGACTGTGCGGCGGCTTATTTTGTGTCGCAATATCGCAATAAGATGAAGAGAAAGACGTCGATAGAGAAGTCGGGGCGCATAGTGGCCTGGATCAATAAGGCGGAGTGGGACCAGGTCACCGAGTACCTCTACTCCACAGACAGCGCCCTGCAGAAGTACGCGCTGCACAGGATCTCTGCGTGGAggggcagGTTTGGGAACAGCACGCCCGTGGCCGTGGAGAGCACCGCAGAGCTGGTCCGCTGTCAGGTGCTGGACGCCTCCGGCCAGCTGGACTCCCATGAGCTGGTCCTGCTGTACGGGATGGCCCTAGTGAGgtttgttaatttaatcaCAGAACGCAGACAGAAAATCGTGACCATCCCTCTGAGAAGACTGGCCAGTCAGATGAACATTCCCGAGTGGATAGTGAACCTGCGACACGAGATCACGCATCAGAAGCTGCCCACCCTGAACTGGTGCCGGAAGGGCTGTAAGTTCGTCCTGGAGTGGCTGCAGCGGGAGTACTGGTCCCGGCAGCTCAACGGCAGCCTGGCCGAGCCCTGGGACTCGGagagcgaggaggaggaggaggaggaggaggaggaagaggagctggCGGAGGATGACTATCTCTCGGCGAGACTCCGGAGAAGAGAGATCTTCAgGAAAGCCAGAGAATTGCTGATATCGTATGAAAAGGAACAATTTCAGACCGTGGCTGAGCTCCACCGAGAGAACAAGGCCAGGAAGGTGTGGCCCAGCCCTTCATCGGACCTGGAGTGGATCGTCATGCAGATCAAGGAAGCGTTGCTTGAGCCCGTCACACTGATGGGAGAGGTAGCCGCCCACTGCCTCCGTCTCCGCGGCTGCCGTGGAAGACGTGAcatgtttgaatggtttgaTACACAACTGGTCCAGATGCCACAGTTAATGAGAAGCTCCGCAGAAAACAGCAGAGAGAGTGAAGTTTTGATGGACGTTCTGCTCAGCGATGGATTCCTTGTGCCAACTGTTGAACAGCTGGAATCTCTGGATATCGATCTCTCGGAGAACGCCAACCCATCCTCGCCCTGCATCCCCCGGCTCTTCCTGCGCTTCTGGGCGCCTCTGCTGAAGAGCCTGGGCCCGGCGTTCGCCCAGGTCCTGCTGGAGAAGCTGTTCCTCGAGCTGCAGCTGTGCGGTGACACCTCGGACCAACGGGCGCGCTACGTCTCTGGCTGGATTTCGGAGATCCTCTGCGGCAGCGACCGGGCAGGTAAACCAGCCGAAGGTGTCAGAAGGTGTCAGGCCCGAAACAAAGCCCACAGGTTCGTCAGCCGAGCGTCTCTTCAGTGGCAGAAGCTCCTGACGCTGTGTCTCGAGTCTCCGTGTCCGGCCACCCCGCGCCTTCTGCAGCAGATCTTGACTGGCATGGACCGGCCTCTGCCCCTGGACACCCAGCGAAAGCTACTCCAGCTCTGCAGCATTTACACGCAGGCCGGGGGCTCCTGTCCCTCCCCAGGCCCGGAGGACCAGCCGGTTTACACGCTGGAGAGCCTGCAGACCCACGCCAGACAGCAGGCCCAGCGCTTGGCCACCCGGGACTGCGGCCCCGCGGAGAAGACGGCGCCCAAGGCAATGGACGCCCTGCAGCAGTACCCGAGTCCAGAGGCCGTGGCGGAGAGGGCGGCGCTGCTGAAGGGGTCGCCGTGGCAGATCTGCACGGACGACGTGAGATGGCAGGATTACCCGCTGGGCAAAGTGCCCCATCAGTCTGAAGACCCCGGCTGCCTGATGCTGGACCACTTCTCCACAATGTCCGTGCTGGACCAGGTTGTGGACAGCGACCGGGCGGCCCACAACGCCAACCCCAGCGTCTCCGGATCGAGCCGCACGGCATCTGACGGCCCGCTATGGACACACAGCGACCTCTGCAAACTGAAAACTGGACTGCAGATGTTCtaggggaaaaagaaaataaatctgagctTGGACTCGTGACACGTGAATCGTCCGTCCCCTCGGATCTGTCGGAGGGACAGGCCGATGGCTCTGTGGTGCAGAGTTGGTTATTTCGGGACATTACAGACGGGCGCGAGGAGGACACCGATCTTTGTCAGATACAGATACGGATGCACGATGCTCGGACCAGCTTATCCACCAAGACCGGATTCGTTTATAATGGCGTCGCGTGTCTGTTGTCGTCAGCCGCTCACAGGCGCTTGTGGACGCAGCGGCAGTTTTCTGTCTCTGTTAACTTTATCCCCCGAGTAAAGAGAACTTTTTTAACCAGTAACAGTCATTCGATCTCGCAGTAAACTTTTTTTCAATGGGGCGTTACACCCGTCTGTAATATACAGCAAATGTTGATTTCATTAGACGCTGTGAACCTttactatttgttttctttttagccTGTATACACACAGTATGTGGATTTCTTTCTAATCCACAGATCTTTTGGACAATGCCTATTTCACAAAACGTCATCATGTCttcataaaaaaagatataaaaaaaaaaaaaaggttaatgttGACACTGATGTGACTAAATGTGCTTGTTAATGTCACCTATTCTACGagtaataaatgtgattttcctTTACTTGGGGTTTTGCCATTGCACTTTTTTTGCTAATTTTGAAAGAGAG

Function

GO: NA

KEGG:

id description
K16912 LAS1; ribosomal biogenesis protein LAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103997 lncRNA downstream 547 2083177 ~ 2086079 (-) True G83343
TU103996 lncRNA downstream 6612 2079669 ~ 2080014 (-) True G83342
TU103930 lncRNA downstream 221399 1854882 ~ 1865227 (-) True G83294
TU103932 lncRNA downstream 221399 1854882 ~ 1865227 (-) False G83294
TU103832 lncRNA downstream 1160062 922859 ~ 926564 (-) True G83205
TU104009 lncRNA upstream 33404 2140290 ~ 2141743 (-) True G83352
TU104012 lncRNA upstream 37518 2144404 ~ 2147117 (-) True G83355
TU104034 lncRNA upstream 83740 2190626 ~ 2190909 (-) True G83371
TU104102 lncRNA upstream 247101 2353987 ~ 2354694 (-) True G83422
TU104123 lncRNA upstream 404438 2511324 ~ 2511549 (-) True G83441
AMCG00021072 mRNA downstream 29241 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021068 mRNA downstream 112518 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021069 mRNA downstream 113089 1969250 ~ 1973537 (-) True AMCG00021069
AMCG00021065 mRNA downstream 133750 1931558 ~ 1952876 (-) True AMCG00021065
AMCG00021067 mRNA downstream 158768 1926713 ~ 1927858 (-) True AMCG00021067
AMCG00021078 mRNA upstream 50763 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021077 mRNA upstream 123622 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021082 mRNA upstream 295288 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021085 mRNA upstream 415974 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021086 mRNA upstream 476444 2583330 ~ 2583617 (-) True AMCG00021086
TU103965 other downstream 108658 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 350115 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 574674 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2641895 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4437606 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10420207 12527093 ~ 12527694 (-) True G84814

Expression Profile