RNA id: AMCG00021078


Basic Information

Item Value
RNA id AMCG00021078
length 6146
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00021078
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2157649 ~ 2176534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTACCGGGCTTGTTGCCCAGTTTCAGCCCCAGTTCTGTCATTGACTCATGGTCTGCCCAAGTCCTGTGCTCTGTCCGTTACAAGATGAAGACGGCTATACAGAGACGCCGATCGGCCCCCTCAGCCATCACCAAAGCCCTCAGCAAATCCAGGACACCCAGCAGGGATGGGTCTCTCTCGACAGCCCCCTTCACCAACGGCTCTTTCATCCAGGCCTTCACATCCCAGACATCGACTTTCATCATGGAGGATCATGTCCGGCTTACAACTGGCCTGCAGACACAGGAGCGACACCTGTTCCTCTTCAGTGACATCCTCATCATAGCCAAGTCCAAGTCTTCCTCTAGCCTAAAGCTGAAGAAACAAGTGCGCCTGAGTGAGATGTGGATTGTGTCCTGCTTGGATGAAGTTTCGGAGAGGAAGCTGAGCCCAAAGAACTCGTTCGTGATTGGCTGGCCGACCACGAACTGTGTGGTCACCCTGAGctcCACTGAAGCCAAGGAGAAGTGGCTTTCTGCTCTGCAATGGCAGATCAGCGAAATGAAACGGGAAGAGTATCCAAAGAAAATAGCCATGAAGTTGATGCTTTTGGATGTGGGGAACTGCACTTCAACGACCACGGTGCACGTGGGCAATACCGATACGGCCGAGCGGGTGATAATGATCACGGCCCAACAACTGGGGATCTCAGGCCGGCCCAGTGACTACCATCTCTGGGTCATTTCAGGGAAGGAGGAAGCCCCCTACCCGCTTATTGGTCACGAGCATCCTTTCAGCATCATCATGAACTGCCTGCGGGAGTCGGTAGACGAGCCCTACCTGGCCAACAACAACATCCTGACGCCTGACGGGACACTTCTCCTGCACCTGCTTCCCAAAGAGCAGCAGTGCCAGTTCATCCTGAAGCCCAGACCAGCCCTCCGGTGCCACATGAGAACAGattCCTTTCAGAAACACTTTAAGAGGAAAAAATCCCTCATCGACTGGGCCCTGAGGAGAGGCAATGCCAGCCAGACAAACTGCCAGGTGGAGTCTCCCACTAATCCCAGGAAGCTCTTCGGTCACTCGTTGTCATCCATCTGCACCAATGGAAACCTACCGAAGCCCATCATGGATATGCTCTGCTTGCTCTACCAAGAAGGGCCTTCAACGAAGGGCATCTTCAGACGTTCGGCAAACGCCAAGACCTGCAAGGAGCTGAAAGAGCGACTGAATTCAGGAGACGCAGTCCAGGTGGAAGGGGAGTCAGTCTTTGTGGCCGCTGCCGTCATCACCTGGATGGAAGCCATGGAGATTGATGAGCAGGACGATAAGATTGAGGCCATGAAAAGGTTGGTGGACCGTCTCCCTGaagcaaatgtaattttactcCGTCACCTATTTGGCCTCCTGCACCACATCGAGAAGAGATCGGAGGAGAATCAGATGACCGCCTTCAATCTGGCTCTCTGTATCGCTCCCAACATCCTGTGGCTCCCCATGGCTACGGGGCCCGAGGAAGAAAGCAAATCCACGAGAAAGGTGGCAACACTAGTCCAGCTCTTGATTGAACACTCAGCCACCATCTTTGGCGACGACATCATGTCTCTGTACAAAGACATGAACAAGGAACAGCGGGAGAGTTCAGAGGATGCCATGGacGGGGACTCTTTTCAGCAGCAGTACTCCTCGGACGAATGTGATGCAGCCGAGCAAGAGAGGCGAAGAGAGCTCAACACTCCGGAGAGGGACTCGTACTTCCTGCCTTTAAACGATTCAATCCTGAAGGAAGGGAAGGAAGACTGGGGGCTTTTGGATAGCATCTGCACCTACAAAAAGGACGTTCTAACCGAAGACAGTGCCTACAGCTGTGAGAATTTGGATGATGTGTCCTTCCACTCCATTGGGTCCATCTGCTCCTTGGGTGGCACACAGAGCATCCAGTCGGCCCGGGACCGCTGTTCCTCTGAGCCAAGCGTGTGCATGAGCTCCCAGCTGCTCACCAGGCTTCACGCTCCAGTGGCCCGTCAGTCGAGCTGTGACGCAGCCATGACGCGGGACCCGACGGACTGCTTCCAGCACATGCAGAAGCTGCAAATGGAGCACTCAACTGTTCTGGAAAGAGACTCGAGCCCGAAGCTGAACAGCAAGTCCAGGTACACCTTTTGGCGGTCGCCCCAGATTGCTTCCAGGATCAGGAACCTGGGGCCACACCGGATGAATCTGTCCAACAGGTCGAGTTTCTCCAGCCTGTCTTCGTCTGCCACCTCTCCCTCTGCATCGTCTCTGAGTTCTCTGGACAGTGCCTTCTCCTACTGCTCCGACTCTGTGTTCTGTCCCAGCGACGTCCCCTCGTTGCCTTTCATGTTTGGGGCCTCTGCCCGGGTGCGGCCGCTTTCTCCCGACACCCCCAGTAAGTTTCCCAAAGAGTGGAGCATGACTCTGCCGTCTTCCATGGCTCAAGATCCTGGCGATTTGGAGTGGTACGACACCTATGATGAAAAGGACGAGGAGAACAATAACCGGAGCAGTGAGGCGGAGGATGCTGAGCACATCCAGACTCTGGAGGAGAAAGAGAGTGGCTCTGAAGACCCACGGGCCTTGAATGTCAACAGCTATGGGAGTGATGAAGACAGCAGTTCTGAAATTGAGGTTGAAGGGGTGGAATCAAATCCATCAGTCAGGAGGGAGCGAGAGGAAAAGCCAACAGAGCTTAATCTGGAGCCTGATACTTCAGAGACCCATATCAAGACACAATGCCGAGAGACGTCAGTGAAACACATAAAGCTGGTACGACCCCAAGGTTTGGTAGCTAATAAGGATAATAAGTTAAAACGTACAAAAATCACATTCTACATGTCCTCAAATAGGGTCacagtgaaaaaacacacagaccaaGCTGAGAAGGATGGGCACACGATTTCAGTAAGCATGTCCAACTCGAGCGATGCCTCTCCAGACCGGGCAGAAAAAGCCTGTCAAACACTAGAGGTCCACATCCCGCAGACTGTCTTTTACGGCCAGAAAACTCCTCTGGTTCTGCGGTCGGTGTCTACAAGTCATCCAGCAAACTCCGAAGACGAGAACAAACAGGTGAgaaccacagccagcagcactcCGATGGCAAGCTTGTGTGCAGAACAGAGTCCCGAATTTCTGGCAACGGCTAAGAGTCACGGCAAGACTGCCAGCGCGATCAGGCACACCATTCGGATACGCCTGCCGGCCGCTGTCAAGAACACCGTCAAGGAATATTTTAACCATGGTGACTCGAGGAGCAGTCAGTCGGATGTTAAAGCCGTGGAAAAGGAGCTCATGAGAAGCAAGTTGGAATGGCAGAGTAGGAGACACACGGTCGTGACGAAAGACATGTTTGGAAATGTCACACACGATGCAGAGTCTTTTGTCTGATACATGAACGCTACTAGATAGTTCGTTAAGTTGAGCCGAAAACGTGGAGAAAGTATTGTTCGATGTGCCAGAGATTTGGGGATGGGTATTCTAAGTATACTGATGCACTTACCAGTCACACCTATAAGTAAAGAAGGACAATTTGTGAAATTTCCCATGATGTGACACTCGAAGGACAAAGGCATTACTCGATTGTTATTGGTCACCCAGCTTCACCAGCTACGTCCTGCAGCTAGTCTGTTTAGATAGATGATATCCAAGGttttttgctgttttaataATATCTGAAGagggtacatttaaaaataaatatggttaACAGAAACCAATTGCTTTGTTTCAGGCGAGAGATTCCAGTTAGAAAGGACagataaatgtaaacaaagcactgacaaaaaataaatctaattaaataaaggaatacaGAAAGTTTCATGGGGTaatttaagaagaagaaaaaaactgtgataaaatatacatcaaCCTCTTGTTTTGTAGGAGAGAAAATGTGTACAATTTTTCAATAAGGTGTGTCCATCGGAAATGGGTGCTTATTAAAGCAAGAACATCAAATGTGAATAATCACATTTTTGCCCTATTTCTGTTAGCATCAATATGTTGTTTTCACTTTCTGTGCTACATCTTGAATGagaagcagtaaaaaaaaaacctgagcTGAAAGATGGGTGACTTAAATCAAATCTGTCCCCTATTTGTTTCTTATTGCCGACAGTATTAGAGATTGAATGAGAAAGTGATGCATGGACAATAAGATATGTGTGTTTCATGGCTGTTGCGGGGGGGAGGTCAGGGTTTTAgaagagtgaggaggagaaggtTTTCTCTGAAGGTCTTGATAAGTAAAGGTAAGAAAGCTACACTAGAAAGTGATTATACTATATGccaggaagagaaagagacgCTGATACAGCAGGAGGTTTTGGGTGAGAGCAGACATTTCCATGGGCTTCACATTCAAAATTATTCCCAAAGATGAATCCGCTCTACTGTATTCTCATGTCACACTCAACGAAAGTGTTTATGATACTGTCTACAAAATTGTACAATTTCTTTCCTGCAACTGAAGTCTTTTCTATAcctttttgtctttatatttaATATCGCATCAACAGGTACTAGTACGGTTCTGTTTCGACTAAATTGTCAAAGTCACATGTTAGTGACATTCTCTACTGACTGGTAGACTCTTATATACCTTGATGTATAAACAGAGAAAAGACTCTAGATCTTTAAACATCTCTGCTCTTTTAATAAACAGAGTCTGGGTTTACTTTAGGTGCTGAGCGCTTACGTGAGCTTTTTTAGGTTTAAAATCTTTCCGTGGTGAAATGCTGATGTTCAAAGGGAAGGAAACGTGTAAAAAAGACATGTCGACTGAATGCTTATTTCCTGTCATTTGTGTTGAAAATGGGGCCACAACACAGGGAATGAGCATGACAGAGAGACCAATGATTCACGGCAAAACTTCTTTGTCCAGGAGCGGAAAACTTACATTTCATGCTAAACTGAATACTGTCTGTAAAAAGTCGCCTGTAATCTGCAGAACGCTGACTGTTTCCAATCACCTGATCAATatctaagaaagaaagaaagtcatGCAAATCAATGAAACCTAATCAGCTGTTTTAATGCTATTTTGAAACATGTTGTATTTCCTTAAGACACCTCTCCACATGTGTCTGCTATTGTGTATATGTCGTTTCCtcacagtttttaaataaaagtattttaatgagTGGAGTGTGTGGGTTTTGTGAAGCACCGCAGCAGTTTTCTCAGCATGTGTGAGTTTGCAAGTCGACAACTTTCATCAGGCAGGTATAAAGTGACATGTTGCTGAGtggagaaacagaaaatactgaatAATCAGAGCTATTCCACCGAGATGCTGTTTTGCCATCAAAGCTCAAATCTGCTCTTCTGGAAACTCTGGGTCTCTTTTTATTTCATGCAAAACAGTAAAGCATTTGgagttttttttccagaaagtgtttacattttaaataaaacattttaaacagaaataaagctgTCCTACTAATTAACCACATTCAGACCAGAGGGACACATATCGCCAAAACACTAGGATACACCTTTGGGCCTGTGGGACTGACTCAGATGGATACCATTCAGGATTGACATCAGTAGAAATTGAATATGATGGGTGGCGGACAACGTGACAGTGACTCACTGTGATGATTGTCTTCGGGGGGGGATCCCTGCAGTTTCACCGAGAGAAAACAATGTCTGTGAAATGTGAATAATTCTCATTGTGACTTCATGCATACTTAATGGAGTCACAGTTAATTTTCTAGTGAGAGGAAATAATGATGTGGTTCAGATTATTAGTCTCTAATGTCCTGAATTATTTCAAGTTGATTTAATTTGCCAACTGCGTGAATTGAAAAGGAAGATCAAATATGGCCTTTTGCCTCCATTTGTTCCTGCCCTGCAACATCTACCAGTTTGAATCCCCTGGTACTTTCCAGTGGGGGGgaatgaatgcattaaaacaacttATTCCCAAAAACTGATGTTGACACACCAGCCCCTCGTGCCCTTTCTGTGTTATCATTGAATGGAAAGATAACATCTGTCCAGggaattacaatgttttaaaggGAATTACACCAGTCTGACCAAAGCATCAAGGAAACGAACACTGTTTCACTGAATATTTGTCTCTAATTCTCTGCCTCACACAGAACCCAGTGGCATCATGCCATTGGGGC

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104012 lncRNA downstream 10532 2144404 ~ 2147117 (-) True G83355
TU104009 lncRNA downstream 15906 2140290 ~ 2141743 (-) True G83352
TU104000 lncRNA downstream 51251 2105064 ~ 2106398 (-) True G83346
TU103997 lncRNA downstream 71570 2083177 ~ 2086079 (-) True G83343
TU103996 lncRNA downstream 77635 2079669 ~ 2080014 (-) True G83342
TU104034 lncRNA upstream 14092 2190626 ~ 2190909 (-) True G83371
TU104102 lncRNA upstream 177453 2353987 ~ 2354694 (-) True G83422
TU104123 lncRNA upstream 334790 2511324 ~ 2511549 (-) True G83441
TU104124 lncRNA upstream 338956 2515490 ~ 2517126 (-) True G83442
TU104158 lncRNA upstream 423975 2600509 ~ 2602840 (-) True G83465
AMCG00021075 mRNA downstream 50763 2086626 ~ 2106886 (-) True AMCG00021075
AMCG00021072 mRNA downstream 100264 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021068 mRNA downstream 183541 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021069 mRNA downstream 184112 1969250 ~ 1973537 (-) True AMCG00021069
AMCG00021065 mRNA downstream 204773 1931558 ~ 1952876 (-) True AMCG00021065
AMCG00021077 mRNA upstream 53974 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021082 mRNA upstream 225640 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021085 mRNA upstream 346326 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021086 mRNA upstream 406796 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021090 mRNA upstream 501051 2677585 ~ 2718919 (-) True AMCG00021090
TU103965 other downstream 179681 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 280467 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 505026 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2572247 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4367958 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10350559 12527093 ~ 12527694 (-) True G84814

Expression Profile