RNA id: AMCG00021080


Basic Information

Item Value
RNA id AMCG00021080
length 1134
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00021080
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2349679 ~ 2353070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAAGTTCATGTGGCTGTCTCTGCCCTACGTGTCCAAGTCGTTCAGGAGGAGCGGGGGCACCAACGCGTCGGACTTCTTCTCCACCCTGTACGGCTTCCCCAACAGCTCCTTCTTCAGCTGGAACTTCACGCTGGACGAGGCCATCTACGCCAACGGGACCCGCTACGAGACCGAGTCGCAGAACCGCACCGTGCAGGCGCTGCTGGTGGTGGCGTACTCCGTGATCATCGTCATCTCGCTGTTCGGCAACATCCTGGTGTGCCACGTCGTGCTGAAGAGCAAGAGGACCCCCTCGGCCACCAGCCTGTTCATCGCCAACCTGGCCATCGCCGACATCCTGATCACCCTGCTCAACACCCCCTTCACCCTGGTGATAATGCACCCTCTCAAACCCCGCATATCCACCGTCAGAGGAGTCATCTGCATCGTGGTGATCTGGGTGATGGCCGCCTGCTTCTCACTACCGCACGCGATTTATCAGAAGCTTTTTCGGTTCGACTTTGGGCATGAGAAGGTCCGGATGGTGTGCCTTCACAGCTTCCCGCCGCCCGCCGATCTCTTCTGGAAGTACCTGGACCTGGCCACCTTCGTCCTGCTCTATGTGCTGCCCCTGTGCGTCATCTCAGTGGCCTACGTCATCGTGGCCAAGAAGCTGTGGATGAGGAACGCCATCGGGGACATCACCATGGAGCAGTACTACGCCCACCGCCGCAAGAAGAAGATGACCCTCAAGATGCTcatgctggtggtggtggtgttcgCCGTGTGCTGGTTCCCACTGAACTGCTACGTGGTCCTCGTCTCAAGCAAAGCCATCGTCACCAACAACGGCCTGTACTTTGCGTTCCACTGGTTCGCCATGAGCAGCACCTGCTACAACCCCTTCATCTACTGCTGGCTGAACGAGAGCTTCCGCTCTGAGCTCAAGTCCctgctgtgtgtctgcaggcgCCAGCCGCCCACCAACACCCACGCCCTGCCCTCCATCTCGCCCCCTTTCAGGAACGCATGGGTCGAGAGTGACAACTACAAGAGGAGCAAGCTCAACCAGTGCACTCGCTCCACGTCCAACGTGCACTCGGGGAGGACTGACATCTCCATTGTGGAGCCCATCGTGGCTGTGACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104074 lncRNA upstream 56638 2278796 ~ 2293041 (+) True G83397
TU104040 lncRNA upstream 127956 2219093 ~ 2221723 (+) True AMCG00021076
TU104037 lncRNA upstream 148120 2201294 ~ 2201559 (+) True G83374
TU103991 lncRNA upstream 242773 2105182 ~ 2106906 (+) True G83338
TU103978 lncRNA upstream 266228 2083114 ~ 2083451 (+) True G83325
TU104109 lncRNA downstream 163189 2516259 ~ 2516915 (+) True G83427
TU104126 lncRNA downstream 169793 2522863 ~ 2525979 (+) True G83443
TU104145 lncRNA downstream 254199 2607269 ~ 2607670 (+) True G83459
TU104186 lncRNA downstream 411723 2764793 ~ 2765004 (+) True G83493
TU104190 lncRNA downstream 584415 2937485 ~ 2937685 (+) True G83497
AMCG00021081 mRNA upstream 72251 2248989 ~ 2277428 (+) True AMCG00021081
AMCG00021076 mRNA upstream 119532 2209482 ~ 2230147 (+) False AMCG00021076
AMCG00021073 mRNA upstream 192785 2151168 ~ 2156894 (+) True AMCG00021073
AMCG00021074 mRNA upstream 203759 2114431 ~ 2145920 (+) True AMCG00021074
AMCG00021070 mRNA upstream 268025 2077424 ~ 2081654 (+) True AMCG00021070
AMCG00021079 mRNA downstream 17009 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021084 mRNA downstream 104859 2457929 ~ 2480032 (+) True AMCG00021084
AMCG00021083 mRNA downstream 153146 2506216 ~ 2512207 (+) True AMCG00021083
AMCG00021087 mRNA downstream 235098 2588168 ~ 2597708 (+) True AMCG00021087
AMCG00021088 mRNA downstream 299643 2652713 ~ 2670775 (+) True AMCG00021088
TU103781 other upstream 1423204 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1444771 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1774201 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 1877902 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4762311 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4762311 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile