RNA id: AMCG00021084


Basic Information

Item Value
RNA id AMCG00021084
length 1830
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00021084
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2457929 ~ 2480032 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGCCCGCTTGGGTTAGGATTAGGAGGACTGTGTGATTCCCCAAACAGGGTTTTTCATGGACCTTTCCAAAACGTTTTCCACAGCGTGCGAAGTGTGCTCCAGAGCAACAGCACCGCCTGCGATAGCCTGGAGCTGCCAAGCTCAAGGTACAGGTGTTTGGAGGAGCAGCACCCCTGGGAGATGCGCCAAACTCATCGGCAGTTGCCGTACAGAGGACTGTGCTTTGGGACCTCACACAGCTGTGGCGCCGAGGCGAAAGACGTCCAGAGTGCCGGCTCTTCCAGACAGCCCGATCCTTTTGCCAGAGTCGGTCATTTTGCAAAGGGATTGCTGGCCGGCAGGAGCGAGTTCTCGGCTGTGGTCGAGCCAGATGATGTGGAGGAGGGCGCTTATGGTGCGTTTCTCCACGGTTTGCGCGACTGCAACACGGAACACAAATCGTGCCGACCTGTTACGCCCCACCAGAGAAAGCAGGCGAAAAGTCACACCAGTGACGCCTATGTAGAGAGCAGTGGCATCGAGTCCGCCTGCACAACCATCTCGGAGACTGCCCGGGAGCTCTGCAAAGCGGTGTCTGTCTCACTGGGCTTGGCCATTGACTCTAATGAGATGAATGACCCGGGACCTAACCAGGGGTCATCTCTGGCCAGTGACGGGAGTCAAGGGAACTGCCTGTTTGATGTGCCCTTGCTGGAGTGCTCTGCAGCTGGGGCAGGTGACCCCATGGCACTTTACAAATACCCCATTGCACAGGAGGGGAGATCCATGCAGAGTGGGGAGGATGGTGACATGTACAAGGGAGCGCACGCCAGTGAGGTGGTCCCTCTGCAGCTCCACAGTGCCACACATGCCAAAGGGGGGGGACAAGAATCAAGGCTGGATAACGAATTGAATAACACAACTGGCGAGGAGTCTGAACATCACATGAATATGGATGGGGGACACTCGGGCTGCTGCCAGTTTGACCAATCGGTGCCACAGAACCCCACTGCCTATGGTCAAAGCGAGCCCTTGTCTGTGGAGCAGAGTCACGTCCCGTCCCATGCCTTGTACAAACCCGCTGCTGTTCCCACTGGACCAGAGGGCAACGCAGAAGGTAAGAATGCCGACTACCCCCCTGAGTATGGTGTCAGGATAAAGACCGAAGGAGAAACCCTAGACCGCGGGCTCTGGGCTGTCCAGTACAGGTACAGCGACAATGGCACCGGGCCTTACCCACCCAATAGACCGTACATGCCCCCTCAGCACCCCGAGCAGTGCGGCGCCGGTCCCTTTGTCTGCCACCCATTCGGGTACGGGAGAGGCTGTGGGCTGGGGCCCCAGGACGGGCACTCTCCAGACCCGTGGTCCACAGGGGGACTCCTGGGCAGGGGGCCCTACACCTCCGCCCCCTGGGTGAAAAATGAAACGGGCGACTGGATGGAGGTCCCTTACCCAGACGTCAGATTTGAGGGCGGCAGAGACAACCTCTTCCCCATGGAGTACTTCTTCCCGCCTCAGAGGACATGTTTGATCTGCGGGGACGAGGCGTCCGGGTGTCACTACGGCGCTCTGACCTGTGGCAGCTGCAAAGTTTTCTTCAAGCGGGCGGCTGAAGGCAAGGTTGACAAGGTTAAAACTCACCAGTTTAGGCACCAGTGTGAAACTGACAGACCTCACCTCCAAATCCCAACTCTTGTGGTGCATATTGAGAGCAGAGAAGCTGATCCAGTGGAGGAGAGGAAAAAGCAAAGTATCTTCCCCCTGGCTCAGGAAGACGCTCATTTCCTGTCCTCAGCCCTAGAGTGGGTGGAAATAGCAGAAGATACACTCGGCCTGCAGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007165 signal transduction biological_process
GO:0005496 steroid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104074 lncRNA upstream 164888 2278796 ~ 2293041 (+) True G83397
TU104040 lncRNA upstream 236206 2219093 ~ 2221723 (+) True AMCG00021076
TU104037 lncRNA upstream 256370 2201294 ~ 2201559 (+) True G83374
TU103991 lncRNA upstream 351023 2105182 ~ 2106906 (+) True G83338
TU103978 lncRNA upstream 374478 2083114 ~ 2083451 (+) True G83325
TU104109 lncRNA downstream 36227 2516259 ~ 2516915 (+) True G83427
TU104126 lncRNA downstream 42831 2522863 ~ 2525979 (+) True G83443
TU104145 lncRNA downstream 127237 2607269 ~ 2607670 (+) True G83459
TU104186 lncRNA downstream 284761 2764793 ~ 2765004 (+) True G83493
TU104190 lncRNA downstream 457453 2937485 ~ 2937685 (+) True G83497
AMCG00021079 mRNA upstream 81035 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021080 mRNA upstream 104859 2349679 ~ 2353070 (+) True AMCG00021080
AMCG00021081 mRNA upstream 180501 2248989 ~ 2277428 (+) True AMCG00021081
AMCG00021076 mRNA upstream 227782 2209482 ~ 2230147 (+) False AMCG00021076
AMCG00021073 mRNA upstream 301035 2151168 ~ 2156894 (+) True AMCG00021073
AMCG00021083 mRNA downstream 26184 2506216 ~ 2512207 (+) True AMCG00021083
AMCG00021087 mRNA downstream 108136 2588168 ~ 2597708 (+) True AMCG00021087
AMCG00021088 mRNA downstream 172681 2652713 ~ 2670775 (+) True AMCG00021088
AMCG00021089 mRNA downstream 239424 2719456 ~ 2746353 (+) True AMCG00021089
AMCG00021093 mRNA downstream 985728 3465760 ~ 3471536 (+) True AMCG00021093
TU103781 other upstream 1531454 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1317809 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1647239 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 1750940 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4635349 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4635349 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile